RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 FAM223BA6NKX1 122 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 IL6RP08887 468 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-209ENST00000496189 CCR6P51684 374 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 PDLIM3Q53GG5 364 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM128Q5BJH2 165 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 FAM209BQ5JX69 171 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 C10orf55Q5SWW7 151 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 ASPHD1Q5U4P2 390 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 THOC7Q6I9Y2 204 aaKnown RBP12.69□□□□□ -0.38
SF3A1-209ENST00000496189 FAM223AQ8IWN6 122 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 TTC9CQ8N5M4 171 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 ADAD2Q8NCV1 583 aaKnown RBP12.69□□□□□ -0.38
SF3A1-209ENST00000496189 OR4A16Q8NH70 328 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 SEC22AQ96IW7 307 aa12.69□□□□□ -0.38
SF3A1-209ENST00000496189 RANGRFQ9HD47 186 aaPredicted RBP12.69□□□□□ -0.38
SF3A1-209ENST00000496189 NOTCH1P46531 2555 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 SEC14L6B5MCN3 397 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 LYRM1O43325 122 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 RBMXL2O75526 392 aaKnown RBP12.68□□□□□ -0.38
SF3A1-209ENST00000496189 CDS2O95674 445 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 DEFA4P12838 97 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 ZP3P21754 424 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 SRPXP78539 464 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 CENPSQ8N2Z9 138 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 OR1L8Q8NGR8 309 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 GALNT14Q96FL9 552 aa12.68□□□□□ -0.38
SF3A1-209ENST00000496189 ALX4Q9H161 411 aaPredicted RBP12.68□□□□□ -0.38
SF3A1-209ENST00000496189 TRAV3A0A0B4J244 114 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 HMX3A6NHT5 357 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 NPIPB5A8MRT5 1133 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 OVOL1O14753 267 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 NDUFB6O95139 128 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 IGKV1-39P01597 117 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 IGKV1D-39P04432 117 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 HIST1H1BP16401 226 aaKnown RBP12.67□□□□□ -0.38
SF3A1-209ENST00000496189 INSL3P51460 131 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 UBE2MP61081 183 aaKnown RBP12.67□□□□□ -0.38
SF3A1-209ENST00000496189 RHOGP84095 191 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 ATP5G2Q06055 141 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 MZT2BQ6NZ67 158 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 HSD17B13Q7Z5P4 300 aaPredicted RBP12.67□□□□□ -0.38
SF3A1-209ENST00000496189 FAM219AQ8IW50 185 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 NECAP1Q8NC96 275 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 GLYATL2Q8WU03 294 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 RBPMSQ93062 196 aaKnown RBP12.67□□□□□ -0.38
SF3A1-209ENST00000496189 IL22RA2Q969J5 263 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 SRSF8Q9BRL6 282 aaKnown RBP12.67□□□□□ -0.38
SF3A1-209ENST00000496189 QTRT1Q9BXR0 403 aaKnown RBP12.67□□□□□ -0.38
SF3A1-209ENST00000496189 OR51B2Q9Y5P1 312 aa12.67□□□□□ -0.38
SF3A1-209ENST00000496189 IGHV4OR15-8A0A075B7B6 117 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 A0A087WW49 117 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 ANKRD34BA5PLL1 514 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TEX22C9J3V5 150 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 PLA2G10O15496 165 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 UPK1BO75841 260 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TRAPPC2P0DI81 140 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TRAPPC2BP0DI82 140 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 OR2B8PP59922 312 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TATDN3Q17R31 274 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 OR5B3Q8NH48 314 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM230Q96A57 120 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM56Q96MV1 263 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 ELOVL1Q9BW60 279 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 THYN1Q9P016 225 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 PEF1Q9UBV8 284 aaKnown RBP12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM56-RWDD3S4R434 201 aa12.66□□□□□ -0.38
SF3A1-209ENST00000496189 TEX50A0A1B0GTY4 177 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 C15orf61A6NNL5 157 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 VAMP1P23763 118 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 PSMB6P28072 239 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 HOXD3P31249 432 aaPredicted RBP12.65□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM187Q14656 261 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM268Q5VZI3 342 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 LGI3Q8N145 548 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 DCUN1D4Q92564 292 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 PDCD10Q9BUL8 212 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 HINT2Q9BX68 163 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 TMEM14BQ9NUH8 114 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 NSG2Q9Y328 171 aa12.65□□□□□ -0.38
SF3A1-209ENST00000496189 NOTCH3Q9UM47 2321 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 WIPF1O43516 503 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 SAP30O75446 220 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 IGKV1-5P01602 117 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 PRH1P02810 166 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 PRB2P02812 416 aaPredicted RBP12.64□□□□□ -0.39
SF3A1-209ENST00000496189 MECP2P51608 486 aaKnown RBP12.64□□□□□ -0.39
SF3A1-209ENST00000496189 SLURP1P55000 103 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 DEFA5Q01523 94 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 DCTN2Q13561 401 aaKnown RBP12.64□□□□□ -0.39
SF3A1-209ENST00000496189 EXOSC2Q13868 293 aaKnown RBP12.64□□□□□ -0.39
SF3A1-209ENST00000496189 RPEL1Q2QD12 228 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 ZNF343Q6P1L6 599 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 ZNF429Q86V71 674 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 SELENOHQ8IZQ5 122 aaKnown RBP12.64□□□□□ -0.39
SF3A1-209ENST00000496189 MRAPQ8TCY5 172 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 AURKAIP1Q9NWT8 199 aaPredicted RBP12.64□□□□□ -0.39
SF3A1-209ENST00000496189 CACFD1Q9UGQ2 172 aa12.64□□□□□ -0.39
SF3A1-209ENST00000496189 TRBV9A0A0B4J1U6 114 aa12.63□□□□□ -0.39
SF3A1-209ENST00000496189 FAM240BA0A1B0GVZ2 78 aa12.63□□□□□ -0.39
SF3A1-209ENST00000496189 OR2J3O76001 311 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms