RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 RPP30P78346 268 aaKnown RBP11.4□□□□□ -0.58
CUX1-209ENST00000487284 HABP2Q14520 560 aaPredicted RBP11.4□□□□□ -0.58
CUX1-209ENST00000487284 VMA21Q3ZAQ7 101 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 MOB3BQ86TA1 216 aa11.4□□□□□ -0.58
CUX1-209ENST00000487284 PINX1Q96BK5 328 aaKnown RBP11.4□□□□□ -0.58
CUX1-209ENST00000487284 OR8U8P0C7N1 319 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 RAB5CP51148 216 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 BLOC1S1P78537 153 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 KRTAP1-1Q07627 177 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 AANATQ16613 207 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 VWC2Q2TAL6 325 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 LRRC75BQ2VPJ9 315 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 MINOS1Q5TGZ0 78 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 HSD17B13Q7Z5P4 300 aaPredicted RBP11.39□□□□□ -0.59
CUX1-209ENST00000487284 THNSL2Q86YJ6 484 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 EIF4E3Q8N5X7 224 aaKnown RBP11.39□□□□□ -0.59
CUX1-209ENST00000487284 OR10P1Q8NGE3 313 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 RITA1Q96K30 269 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 TMEM147Q9BVK8 224 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 PARP11Q9NR21 331 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 MINOS1-NBL1R4GNA1 71 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 PLXNB1O43157 2135 aa11.39□□□□□ -0.59
CUX1-209ENST00000487284 TRAV40A0A0B4J280 105 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 CENPVL3A0A0U1RRI6 287 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 OOSP1A8MZH6 123 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 J3QLI3 93 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 SLC25A17O43808 307 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 IFNA10P01566 189 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 CRYGBP07316 175 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 RUNX1Q01196 453 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 TEX45Q8NA69 505 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 OR2G3Q8NGZ4 309 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 TMEM170AQ8WVE7 144 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 CFHR4Q92496 578 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 RNF5Q99942 180 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 COMMD5Q9GZQ3 224 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 WDR61Q9GZS3 305 aaKnown RBP11.38□□□□□ -0.59
CUX1-209ENST00000487284 PLEKHA3Q9HB20 300 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 ENY2Q9NPA8 101 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 HIVEP1P15822 2718 aa11.38□□□□□ -0.59
CUX1-209ENST00000487284 IGHV3OR16-10A0A075B7F0 116 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 UBE2L5PA0A1B0GUS4 154 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 UMAD1C9J7I0 102 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 PRSS46E5RG02 174 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 INS-IGF2F8WCM5 200 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 TRIM77I1YAP6 450 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 RRHO14718 337 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 TIMM23O14925 209 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 VENTXO95231 258 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 CD1BP29016 333 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 UBE2E1P51965 193 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 MRGPRG-AS1Q2M3A8 158 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 PXDC1Q5TGL8 231 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 SLC25A24Q6NUK1 477 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 SPNS3Q6ZMD2 512 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 LHFPL4Q7Z7J7 247 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 SLC24A4Q8NFF2 622 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 OR1L8Q8NGR8 309 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 SCGB1C1Q8TD33 95 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 PSMG3Q9BT73 122 aaPredicted RBP11.37□□□□□ -0.59
CUX1-209ENST00000487284 ZNF430Q9H8G1 570 aaPredicted RBP11.37□□□□□ -0.59
CUX1-209ENST00000487284 TPSG1Q9NRR2 321 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 NDUFA4L2Q9NRX3 87 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 UQCC1Q9NVA1 299 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 RFNGQ9Y644 331 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 NAV3Q8IVL0 2385 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 NUDT19A8MXV4 375 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 TEX46H3BTG2 121 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 IGHV4-38-2P0DP08 117 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 NPY1RP25929 384 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 ATP5IP56385 69 aaPredicted RBP11.37□□□□□ -0.59
CUX1-209ENST00000487284 PSG5Q15238 335 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 BSXQ3C1V8 233 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 TMEM182Q6ZP80 229 aaPredicted RBP11.37□□□□□ -0.59
CUX1-209ENST00000487284 Q6ZRG5 221 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 LYPD6BQ8NI32 183 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 HINT2Q9BX68 163 aa11.37□□□□□ -0.59
CUX1-209ENST00000487284 TBL2Q9Y4P3 447 aaKnown RBP11.37□□□□□ -0.59
CUX1-209ENST00000487284 SONP18583 2426 aaKnown RBP11.36□□□□□ -0.59
CUX1-209ENST00000487284 MDKP21741 143 aaPredicted RBP11.36□□□□□ -0.59
CUX1-209ENST00000487284 CNTFRP26992 372 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 RAB11AP62491 216 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 KLF17Q5JT82 389 aaPredicted RBP11.36□□□□□ -0.59
CUX1-209ENST00000487284 CCDC144NLQ6NUI1 221 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 BTNL8Q6UX41 500 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 ETV3LQ6ZN32 361 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 MMD2Q8IY49 270 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 TAF15Q92804 592 aaKnown RBP eCLIP11.36□□□□□ -0.59
CUX1-209ENST00000487284 FAM210AQ96ND0 272 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 GGACTQ9BVM4 153 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 TIMM9Q9Y5J7 89 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 HILPDAQ9Y5L2 63 aa11.36□□□□□ -0.59
CUX1-209ENST00000487284 RAB19A4D1S5 217 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 CGB1A6NKQ9 187 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 CD5LO43866 347 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 OPN1MWP04001 364 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 OPN1MW2P0DN77 364 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 OPN1MW3P0DN78 364 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 CAMLGP49069 296 aa11.35□□□□□ -0.59
CUX1-209ENST00000487284 F2RL1P55085 397 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms