RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 FOXI3A8MTJ6 420 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-207ENST00000468384 C9JCJ5 164 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 PPP5D1E7EU14 171 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 H7C1H1 209 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 ITGB1BP1O14713 200 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 CST4P01036 141 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 RD3LP0DJH9 198 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 PYCR1P32322 319 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 MRPL19P49406 292 aaKnown RBP3.04□□□□□ -1.92
HMGB1-207ENST00000468384 RND3P61587 244 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 DGCR6Q14129 220 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 CYP51A1Q16850 503 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 LIN52Q52LA3 116 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 LAMTOR1Q6IAA8 161 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 KRTAP5-7Q6L8G8 165 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 RPS27LQ71UM5 84 aaKnown RBP3.04□□□□□ -1.92
HMGB1-207ENST00000468384 LRRC34Q8IZ02 419 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 LINC00471Q8N535 108 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 Q8NBF4 154 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 OR4B1Q8NGF8 309 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 OR8J2Q8NGG1 315 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 C1orf54Q8WWF1 131 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 TRUB1Q8WWH5 349 aaKnown RBP3.04□□□□□ -1.92
HMGB1-207ENST00000468384 OR5P3Q8WZ94 311 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 RNF170Q96K19 258 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 KCNA7Q96RP8 456 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 OSBPL10Q9BXB5 764 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 VCX3BQ9H321 246 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 TMEM38AQ9H6F2 299 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 OR2S2Q9NQN1 319 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 CLEC2DQ9UHP7 191 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 ANGPT4Q9Y264 503 aa3.04□□□□□ -1.92
HMGB1-207ENST00000468384 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 TRBV9A0A0B4J1U6 114 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 FAM231BA6NCW3 169 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 RPL37AP8A6NKH3 93 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 SIRPB1O00241 398 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 CXCR6O00574 342 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 IDH3BO43837 385 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 GGCTO75223 188 aaKnown RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 CX3CR1P49238 355 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 GNG10P50151 68 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 CRISP1P54107 249 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 HIST1H3AP68431 136 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 WFDC2Q14508 124 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 SAMD4BQ5PRF9 694 aaKnown RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 HIST2H3PS2Q5TEC6 136 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 KRTAP5-10Q6L8G5 202 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 LRRC74BQ6ZQY2 392 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 HIST2H3AQ71DI3 136 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 BOD1L2Q8IYS8 172 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 JAGN1Q8N5M9 183 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 RTN4IP1Q8WWV3 396 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 AQP3Q92482 292 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 ISOC2Q96AB3 205 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 TMEM80Q96HE8 168 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 C9orf85Q96MD7 179 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 C7orf50Q9BRJ6 194 aaKnown RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 NAA50Q9GZZ1 169 aaKnown RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 OR51I2Q9H344 312 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 PAK1IP1Q9NWT1 392 aaPredicted RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 TVP23BQ9NYZ1 205 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 EHFQ9NZC4 300 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 MRPL27Q9P0M9 148 aaKnown RBP3.03□□□□□ -1.92
HMGB1-207ENST00000468384 PSORS1C2Q9UIG4 136 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 PRELID1Q9Y255 219 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 KIF25-AS1Q9Y6Z4 181 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 URGCP-MRPS24S4R325 110 aa3.03□□□□□ -1.92
HMGB1-207ENST00000468384 IGHV3-16A0A0C4DH30 117 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 TCRBV9S1A1TA0A576 114 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 CCDC182A6NF36 153 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 FABP12A6NFH5 140 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 XRCC2O43543 280 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 SULT1B1O43704 296 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 HSBP1O75506 76 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 SC5DO75845 299 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 SNRPCP09234 159 aaKnown RBP3.02□□□□□ -1.93
HMGB1-207ENST00000468384 CGB7P0DN87 165 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 LAMP1P11279 417 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 MGMTP16455 207 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 HTR2CP28335 458 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 TSPAN5P62079 268 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 LSM6P62312 80 aaKnown RBP3.02□□□□□ -1.93
HMGB1-207ENST00000468384 RPL18Q07020 188 aaKnown RBP3.02□□□□□ -1.93
HMGB1-207ENST00000468384 TRAM2Q15035 370 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 RGNQ15493 299 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 GRK1Q15835 563 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 TNXAQ16473 311 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 LEMD1Q68G75 181 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 SPINK6Q6UWN8 80 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 DCXRQ7Z4W1 244 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF546Q86UE3 836 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 OR6V1Q8N148 313 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 SYS1Q8N2H4 156 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 MS4A15Q8N5U1 240 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 OR52P1PQ8NH57 321 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 IL1F10Q8WWZ1 152 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 ZNF799Q96GE5 643 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 RNF2Q99496 336 aa3.02□□□□□ -1.93
HMGB1-207ENST00000468384 SORT1Q99523 831 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms