RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 VAMP1P23763 118 aa13.23□□□□□ -0.29
VPS52-215ENST00000464425 TPPP2P59282 170 aa13.23□□□□□ -0.29
VPS52-215ENST00000464425 RPL8P62917 257 aaKnown RBP13.23□□□□□ -0.29
VPS52-215ENST00000464425 DCTN2Q13561 401 aaKnown RBP13.23□□□□□ -0.29
VPS52-215ENST00000464425 C10orf55Q5SWW7 151 aa13.23□□□□□ -0.29
VPS52-215ENST00000464425 H2BFWTQ7Z2G1 175 aa13.23□□□□□ -0.29
VPS52-215ENST00000464425 SELENOHQ8IZQ5 122 aaKnown RBP13.23□□□□□ -0.29
VPS52-215ENST00000464425 LRTM2Q8N967 370 aa13.23□□□□□ -0.29
VPS52-215ENST00000464425 SRSF12Q8WXF0 261 aaKnown RBP13.23□□□□□ -0.29
VPS52-215ENST00000464425 TRAV6A0A075B6T7 132 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 C9orf170A2RU37 121 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 IGKV1-5P01602 117 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 TRGV3P03979 118 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 P0C879 139 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 ANXA7P20073 488 aaKnown RBP13.22□□□□□ -0.29
VPS52-215ENST00000464425 BEAN1Q3B7T3 259 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 FAM219AQ8IW50 185 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 LGI3Q8N145 548 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 OR11H1Q8NG94 326 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 LHFPL5Q8TAF8 219 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 TMEM68Q96MH6 324 aa13.22□□□□□ -0.29
VPS52-215ENST00000464425 I3L521 148 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 SNAPC5O75971 98 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 PTTG1O95997 202 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 IGHV3-11P01762 117 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 HLA-AP01891 365 aaKnown RBP13.21□□□□□ -0.29
VPS52-215ENST00000464425 HLA-GP17693 338 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 DHRS2Q13268 280 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 C4orf46Q504U0 113 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 TMEM268Q5VZI3 342 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 PLET1Q6UQ28 207 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 LYG2Q86SG7 212 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 OR1N2Q8NGR9 330 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 LSM10Q969L4 123 aaKnown RBP13.21□□□□□ -0.29
VPS52-215ENST00000464425 RRNAD1Q96FB5 475 aaKnown RBP13.21□□□□□ -0.29
VPS52-215ENST00000464425 COA4Q9NYJ1 87 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 FKBP11Q9NYL4 201 aa13.21□□□□□ -0.29
VPS52-215ENST00000464425 TRAV3A0A0B4J244 114 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 A0A0B4J2A0 478 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 DUXBA0A1W2PPF3 345 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 DUS4LO95620 317 aaKnown RBP13.2□□□□□ -0.3
VPS52-215ENST00000464425 PRB2P02812 416 aaPredicted RBP13.2□□□□□ -0.3
VPS52-215ENST00000464425 OR9G9P0C7N8 305 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 MYOD1P15172 320 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 AKR1C2P52895 323 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 ANKRD55Q3KP44 614 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 RCC1LQ96I51 464 aaKnown RBP13.2□□□□□ -0.3
VPS52-215ENST00000464425 FYTTD1Q96QD9 318 aaKnown RBP13.2□□□□□ -0.3
VPS52-215ENST00000464425 SPIN2AQ99865 258 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 SPIN2BQ9BPZ2 258 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 MARVELD1Q9BSK0 173 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 SLA2Q9H6Q3 261 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 SHPKQ9UHJ6 478 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 PRNDQ9UKY0 176 aa13.2□□□□□ -0.3
VPS52-215ENST00000464425 HMX3A6NHT5 357 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 RPL27AP46776 148 aaKnown RBP13.19□□□□□ -0.3
VPS52-215ENST00000464425 RUNX1Q01196 453 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 DEFA5Q01523 94 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 SLC35G3Q8N808 338 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 OR4A16Q8NH70 328 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 DPF1Q92782 380 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 COMMD5Q9GZQ3 224 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 TMEM14BQ9NUH8 114 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 PRR13Q9NZ81 148 aa13.19□□□□□ -0.3
VPS52-215ENST00000464425 C15orf61A6NNL5 157 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 E7EUB6 86 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 H3BUA1 57 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 PRH1P02810 166 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 IL5P05113 134 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 LGALS1P09382 135 aaKnown RBP13.18□□□□□ -0.3
VPS52-215ENST00000464425 OR2B8PP59922 312 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 ZNF616Q08AN1 781 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 FHL3Q13643 280 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 KPRPQ5T749 579 aaPredicted RBP13.18□□□□□ -0.3
VPS52-215ENST00000464425 LYZL2Q7Z4W2 148 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 ZNF429Q86V71 674 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 OR5B3Q8NH48 314 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 COQ8AQ8NI60 647 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 MITD1Q8WV92 249 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 ZNF257Q9Y2Q1 563 aa13.18□□□□□ -0.3
VPS52-215ENST00000464425 A0A0B4J293 547 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 TEX50A0A1B0GTY4 177 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 C13orf42A0A1B0GVH6 325 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 A0A1B0GW64 132 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 INMT-MINDY4F8WBC2 141 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 AARDQ4LEZ3 155 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 NMSQ5H8A3 153 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 THOC7Q6I9Y2 204 aaKnown RBP13.17□□□□□ -0.3
VPS52-215ENST00000464425 RNASE11Q8TAA1 199 aaKnown RBP13.17□□□□□ -0.3
VPS52-215ENST00000464425 GPR146Q96CH1 333 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 SRSF8Q9BRL6 282 aaKnown RBP13.17□□□□□ -0.3
VPS52-215ENST00000464425 CACFD1Q9UGQ2 172 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 NSG2Q9Y328 171 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 TMED3Q9Y3Q3 217 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 OR51B2Q9Y5P1 312 aa13.17□□□□□ -0.3
VPS52-215ENST00000464425 IGHV4OR15-8A0A075B7B6 117 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 A0A087WW49 117 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 A0A0G2JRQ6 117 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 TEX22C9J3V5 150 aa13.16□□□□□ -0.3
VPS52-215ENST00000464425 WIPF1O43516 503 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms