RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ZNF474Q6S9Z5 364 aaPredicted RBP11.21□□□□□ -0.61
COL6A3-207ENST00000433762 VKORC1L1Q8N0U8 176 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 NUP37Q8NFH4 326 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 OR1L8Q8NGR8 309 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 SGMS2Q8NHU3 365 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 TMEM37Q8WXS4 190 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 GAFA1Q96PS6 74 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 DERL1Q9BUN8 251 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 IL36BQ9NZH7 164 aa11.21□□□□□ -0.61
COL6A3-207ENST00000433762 RPUSD1Q9UJJ7 312 aaKnown RBP11.21□□□□□ -0.61
COL6A3-207ENST00000433762 CA2P00918 260 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 C1QTNF9P0C862 333 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 ESDP10768 282 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 WT1P19544 449 aaPredicted RBP11.21□□□□□ -0.62
COL6A3-207ENST00000433762 PQLC2Q6ZP29 291 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 SSX8Q7RTT4 187 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 PLEKHA3Q9HB20 300 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 OR51B2Q9Y5P1 312 aa11.21□□□□□ -0.62
COL6A3-207ENST00000433762 SCO2A0A1W2PP80 73 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 PLA2G5P39877 138 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 C1orf229Q6ZS94 237 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 RNF2Q99496 336 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 GCM1Q9NP62 436 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 YTHDF2Q9Y5A9 579 aaKnown RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 A8MWP6 167 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 LINC00869P0C866 280 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 CEACAM8P31997 349 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 SSTP61278 116 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 RPL31P62899 125 aaKnown RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 TNFAIP6P98066 277 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 MEF2CQ06413 473 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 SRSF6Q13247 344 aaKnown RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 FAM71F2Q6NXP2 309 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 TCF23Q7RTU1 214 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF114Q8NC26 417 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 OCC1Q8TAD7 63 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 OSR1Q8TAX0 266 aaPredicted RBP11.2□□□□□ -0.62
COL6A3-207ENST00000433762 TP53TG5Q9Y2B4 290 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 FAM215AQ9Y5M1 114 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 LINC00312Q9Y6C7 94 aa11.2□□□□□ -0.62
COL6A3-207ENST00000433762 RAI1Q7Z5J4 1906 aaPredicted RBP11.19□□□□□ -0.62
COL6A3-207ENST00000433762 SPRY3O43610 288 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 RD3LP0DJH9 198 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 TAS2R45P59539 299 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 DEFB109BQ30KR1 87 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 Q6ZS92 163 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 CACNG8Q8WXS5 425 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 ZCCHC14Q8WYQ9 949 aaKnown RBP11.19□□□□□ -0.62
COL6A3-207ENST00000433762 TECRQ9NZ01 308 aaKnown RBP11.19□□□□□ -0.62
COL6A3-207ENST00000433762 FREM2Q5SZK8 3169 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 hADV38S2A0JD32 116 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 J3QR06 171 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 IGHV1-46P01743 117 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 CRYABP02511 175 aaKnown RBP11.19□□□□□ -0.62
COL6A3-207ENST00000433762 OR5G3P0C626 314 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 NHLH1Q02575 133 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 LYG1Q8N1E2 194 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 C8orf31Q8N9H6 132 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 SSMEM1Q8WWF3 244 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 NDUFAF3Q9BU61 184 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 MRPL32Q9BYC8 188 aaKnown RBP11.19□□□□□ -0.62
COL6A3-207ENST00000433762 SEPSECSQ9HD40 501 aaKnown RBP11.19□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF292O60281 2723 aa11.19□□□□□ -0.62
COL6A3-207ENST00000433762 PRR14LQ5THK1 2151 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 PAFAH1B2P68402 229 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 SPRNQ5BIV9 151 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF833PQ6ZTB9 187 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 OR4A5Q8NH83 315 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 EAF1Q96JC9 268 aaPredicted RBP11.18□□□□□ -0.62
COL6A3-207ENST00000433762 C2orf88Q9BSF0 95 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 GAL3ST2Q9H3Q3 398 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 SLC35D1Q9NTN3 355 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 OR5T1Q8NG75 326 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 PLPPR2Q96GM1 343 aa11.18□□□□□ -0.62
COL6A3-207ENST00000433762 NKX6-3A6NJ46 265 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 MT-ND6P03923 174 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 CT45A6P0DMU7 189 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 CT45A5P0DMU8 189 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 CT45A7P0DMV0 189 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 IRF2P14316 349 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 IGFBP2P18065 325 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 KRTCAP3Q53RY4 240 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 MRPL41Q8IXM3 137 aaKnown RBP11.17□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF664Q8N3J9 261 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 NABP2Q9BQ15 211 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 A0A1W2PRE2 83 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 TNFRSF1AP19438 455 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 LGALS4P56470 323 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 RAB4BP61018 213 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 CLEC12BQ2HXU8 276 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF600Q6ZNG1 722 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 OR4P4Q8NGL7 312 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 OSTCQ9NRP0 149 aa11.17□□□□□ -0.62
COL6A3-207ENST00000433762 RPEL1Q2QD12 228 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 TMEM177Q53S58 311 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 ZNF596Q8TC21 504 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 GVINP1Q7Z2Y8 2422 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 TEX50A0A1B0GTY4 177 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 K7EN84 100 aa11.16□□□□□ -0.62
COL6A3-207ENST00000433762 APOA2P02652 100 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms