RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 WDR61Q9GZS3 305 aaKnown RBP6.87□□□□□ -1.31
CD44-208ENST00000428726 IFI27L2Q9H2X8 130 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 SIRT7Q9NRC8 400 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 IGHV3OR16-8A0A075B7F1 116 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 A0A087X0M5 115 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 TRAV1-1A0A0B4J248 108 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 A0A1B0GX30 115 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 LOXL3P58215 753 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 S100A12P80511 92 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 EIF4EBP1Q13541 118 aaPredicted RBP6.87□□□□□ -1.31
CD44-208ENST00000428726 ZNF66Q6ZN08 573 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 ZNF709Q8N972 641 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 MS4A5Q9H3V2 200 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 PRDM13Q9H4Q3 707 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 SLC25A10Q9UBX3 287 aaPredicted RBP6.87□□□□□ -1.31
CD44-208ENST00000428726 FUT9Q9Y231 359 aa6.87□□□□□ -1.31
CD44-208ENST00000428726 RAI1Q7Z5J4 1906 aaPredicted RBP6.86□□□□□ -1.31
CD44-208ENST00000428726 TRGV10A0A0A0MS01 117 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 ADH4P08319 380 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 GZMHP20718 246 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 FAM90A2PQ658T7 463 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 TMEM108Q6UXF1 575 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 C16orf82Q7Z2V1 217 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 HIST3H2BBQ8N257 126 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 PNKDQ8N490 385 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 C14orf144Q96I85 54 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 UHRF2Q96PU4 802 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 PARD6GQ9BYG4 376 aaPredicted RBP6.86□□□□□ -1.31
CD44-208ENST00000428726 HSPB7Q9UBY9 170 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 RPH3ALQ9UNE2 315 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.86□□□□□ -1.31
CD44-208ENST00000428726 MGST3O14880 152 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 GFRA3O60609 400 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 GNB2P62879 340 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 SSBP2P81877 361 aaPredicted RBP6.86□□□□□ -1.31
CD44-208ENST00000428726 SERF2P84101 59 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 HTD2P86397 168 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 LRRC75BQ2VPJ9 315 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 ZNF506Q5JVG8 444 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 RUSC1-AS1Q66K80 236 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 OR4A47Q6IF82 309 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 PPP1R35Q8TAP8 253 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 GAFA1Q96PS6 74 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 MRPL20Q9BYC9 149 aaKnown RBP6.86□□□□□ -1.31
CD44-208ENST00000428726 OR6C3Q9NZP0 311 aa6.86□□□□□ -1.31
CD44-208ENST00000428726 IGHV3-35A0A0C4DH35 117 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 C15orf62A8K5M9 175 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 E7EQL1 145 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 CRYABP02511 175 aaKnown RBP6.85□□□□□ -1.31
CD44-208ENST00000428726 P0C879 139 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 CFHR2P36980 270 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 ERVK-16P61578 105 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 OR2T6Q8NHC8 308 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 TMEM170AQ8WVE7 144 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 HSD17B10Q99714 261 aaKnown RBP6.85□□□□□ -1.31
CD44-208ENST00000428726 HIST1H2BLQ99880 126 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 TCEAL7Q9BRU2 100 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 FAM103A1Q9BTL3 118 aaKnown RBP6.85□□□□□ -1.31
CD44-208ENST00000428726 SEPSECSQ9HD40 501 aaKnown RBP6.85□□□□□ -1.31
CD44-208ENST00000428726 MYO9AB2RTY4 2548 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 XKRY2A2RUG3 117 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 SEC14L6B5MCN3 397 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 DVL1O14640 695 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 C1QTNF9P0C862 333 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 BCL2P10415 239 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 IGFBP2P18065 325 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 C3orf36Q3SXR2 165 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 PDLIM3Q53GG5 364 aaPredicted RBP6.85□□□□□ -1.31
CD44-208ENST00000428726 STUMQ69YW2 141 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 TMEM14EPQ6UXP3 125 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 OR10X1Q8NGY0 326 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 OR4X1Q8NH49 305 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 MISP3Q96FF7 219 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 CTSZQ9UBR2 303 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 HILPDAQ9Y5L2 63 aa6.85□□□□□ -1.31
CD44-208ENST00000428726 TRAV5A0A0B4J249 113 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 LOC102723971A0A1B0GUV8 181 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 GRIFINA4D1Z8 144 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 RAB29O14966 203 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 CA2P00918 260 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 PMS2P11Q13670 270 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 BATFQ16520 125 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 ZNF114Q8NC26 417 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 OR9G1Q8NH87 305 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 MBD3L1Q8WWY6 194 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 ZCCHC14Q8WYQ9 949 aaKnown RBP6.84□□□□□ -1.31
CD44-208ENST00000428726 YPEL4Q96NS1 127 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 NPCDR1Q9BY65 106 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 CISD1Q9NZ45 108 aaKnown RBP6.84□□□□□ -1.31
CD44-208ENST00000428726 TCF19Q9Y242 345 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 A0A1W2PPV4 95 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 CLDN34H7C241 214 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 SLC25A17O43808 307 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 NDUFB4O95168 129 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 FRMD6-AS1P0C7T7 363 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 CD1BP29016 333 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 TIMP3P35625 211 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 ATP6V1FQ16864 119 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 LEMD1Q68G75 181 aa6.84□□□□□ -1.31
CD44-208ENST00000428726 TMEM200BQ69YZ2 307 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms