RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 FAM78BQ5VT40 261 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 FAM57AQ8TBR7 257 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 OR2V2Q96R30 315 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 NDUFAF3Q9BU61 184 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 CALYQ9NYX4 217 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 A8MWP6 167 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 CXorf1O96002 111 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 TIMP3P35625 211 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 KRTCAP3Q53RY4 240 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 TMEM208Q9BTX3 173 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 NPVFQ9HCQ7 196 aa11.75□□□□□ -0.53
LIG1-202ENST00000427526 HEATR1Q9H583 2144 aaKnown RBP11.74□□□□□ -0.53
LIG1-202ENST00000427526 PGPEP1LA6NFU8 196 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 M0R1B8 84 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 CT45A1Q5HYN5 189 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 C22orf34Q6ZV56 151 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 CT45A3Q8NHU0 189 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 C15orf61A6NNL5 157 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 ARSJQ5FYB0 599 aaPredicted RBP11.74□□□□□ -0.53
LIG1-202ENST00000427526 MOGAT3Q86VF5 341 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 Q8NA96 180 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 OR4S2Q8NH73 311 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 CADP27708 2225 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 BSNQ9UPA5 3926 aa11.74□□□□□ -0.53
LIG1-202ENST00000427526 LINC00614P0C842 121 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 FAM27E3Q08E93 113 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 TBR1Q16650 682 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 LEAP2Q969E1 77 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 SDSLQ96GA7 329 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 SFRP2Q96HF1 295 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 TMEM14BQ9NUH8 114 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 CEACAM8P31997 349 aaPredicted RBP11.73□□□□□ -0.53
LIG1-202ENST00000427526 RAB7AP51149 207 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 BEND2Q8NDZ0 799 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 FOXA2Q9Y261 457 aaPredicted RBP11.73□□□□□ -0.53
LIG1-202ENST00000427526 GCGP01275 180 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 IL6RP08887 468 aaPredicted RBP11.73□□□□□ -0.53
LIG1-202ENST00000427526 TIMM23BQ5SRD1 257 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 SEPSECSQ9HD40 501 aaKnown RBP11.73□□□□□ -0.53
LIG1-202ENST00000427526 SH3BGRL2Q9UJC5 107 aa11.73□□□□□ -0.53
LIG1-202ENST00000427526 SAA2-SAA4A0A096LPE2 208 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 SAA2P0DJI9 122 aaPredicted RBP11.72□□□□□ -0.53
LIG1-202ENST00000427526 CNN1P51911 297 aaKnown RBP11.72□□□□□ -0.53
LIG1-202ENST00000427526 EFNB3Q15768 340 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 OR4A47Q6IF82 309 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 DOLPP1Q86YN1 238 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.72□□□□□ -0.53
LIG1-202ENST00000427526 SSMEM1Q8WWF3 244 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 BTF3L4Q96K17 158 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 ELOVL5Q9NYP7 299 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 YTHDF2Q9Y5A9 579 aaKnown RBP11.72□□□□□ -0.53
LIG1-202ENST00000427526 A0A0U1RQK1 487 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 KBTBD11-OT1A0A1B0GTJ5 212 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 SCO2A0A1W2PP80 73 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 ZNF320A2RRD8 509 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 HSPE1P61604 102 aaKnown RBP11.72□□□□□ -0.53
LIG1-202ENST00000427526 VHLLQ6RSH7 139 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 ZNF664Q8N3J9 261 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 FAM222BQ8WU58 562 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 TMEM204Q9BSN7 226 aa11.72□□□□□ -0.53
LIG1-202ENST00000427526 CHTOPQ9Y3Y2 248 aaKnown RBP11.72□□□□□ -0.53
LIG1-202ENST00000427526 GLRXP35754 106 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 TDGF1P3P51864 188 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 KLF3P57682 345 aaPredicted RBP11.71□□□□□ -0.53
LIG1-202ENST00000427526 NHLH1Q02575 133 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 GAGE1Q13065 139 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 PRR30Q53SZ7 412 aaPredicted RBP11.71□□□□□ -0.53
LIG1-202ENST00000427526 FAM201AQ5SY85 155 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 TEPPQ6URK8 271 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 SGMS2Q8NHU3 365 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 OCC1Q8TAD7 63 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 ITLN1Q8WWA0 313 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 SFXN3Q9BWM7 321 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 CHODLQ9H9P2 273 aa11.71□□□□□ -0.53
LIG1-202ENST00000427526 IGLV3-9A0A075B6K5 115 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 K7ENP7 123 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 SPRY3O43610 288 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 GCHFRP30047 84 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 STPG3Q8N7X2 389 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 SLC24A4Q8NFF2 622 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 SNHG12Q9BXW3 62 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 TRAPPC1Q9Y5R8 145 aa11.71□□□□□ -0.54
LIG1-202ENST00000427526 A8MXE2 369 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 COL8A2P25067 703 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 NPY1RP25929 384 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 GATA4P43694 442 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 RPL29P47914 159 aaKnown RBP11.7□□□□□ -0.54
LIG1-202ENST00000427526 SPATA31B1PQ5VZV4 182 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 ETFRF1Q6IPR1 90 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 GBGT1Q8N5D6 347 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 ZNF439Q8NDP4 499 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 TMEM18Q96B42 140 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 DSCAMO60469 2012 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 THBS3P49746 956 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 PRR20EP86478 221 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 PRR20CP86479 221 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 PRR20DP86480 221 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 PRR20BP86481 221 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 PRR20AP86496 221 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 POU2AF1Q16633 256 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms