RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 KRASP01116 189 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 OR9G9P0C7N8 305 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 EGR2P11161 476 aaPredicted RBP7.21□□□□□ -1.26
VPS53-203ENST00000401468 HLA-GP17693 338 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 G6PCP35575 357 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 ERVK-16P61578 105 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 CX3CL1P78423 397 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 CFHR3Q02985 330 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 C2orf68Q2NKX9 166 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 KLK9Q2XQG4 91 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 TRIM16LQ309B1 348 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 TMEM268Q5VZI3 342 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 MMD2Q8IY49 270 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 SLC35G3Q8N808 338 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 MINDY2Q8NBR6 621 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 CITED2Q99967 270 aaPredicted RBP7.21□□□□□ -1.26
VPS53-203ENST00000401468 OR51J1Q9H342 316 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 KLK9Q9UKQ9 250 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 FOXA2Q9Y261 457 aaPredicted RBP7.21□□□□□ -1.26
VPS53-203ENST00000401468 TMED3Q9Y3Q3 217 aa7.21□□□□□ -1.26
VPS53-203ENST00000401468 TRAV3A0A0B4J244 114 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 A0A1B0GW64 132 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 CGB1A6NKQ9 187 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 LINC01548A6NM66 108 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 INS-IGF2F8WCM5 200 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 PITX3O75364 302 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 BRI3O95415 125 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 DHFRP00374 187 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 CA2P00918 260 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 VAMP1P23763 118 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 RPL8P62917 257 aaKnown RBP7.2□□□□□ -1.26
VPS53-203ENST00000401468 C4orf46Q504U0 113 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 AKIRIN2Q53H80 203 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 C9orf152Q5JTZ5 239 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 THOC7Q6I9Y2 204 aaKnown RBP7.2□□□□□ -1.26
VPS53-203ENST00000401468 Q6ZRM9 215 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 LYZL2Q7Z4W2 148 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 ZNF695Q8IW36 515 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 DMBX1Q8NFW5 382 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 OR52B4Q8NGK2 314 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 OR5B3Q8NH48 314 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 OR52E5Q8NH55 327 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 SRSF8Q9BRL6 282 aaKnown RBP7.2□□□□□ -1.26
VPS53-203ENST00000401468 SEC22CQ9BRL7 303 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 C19orf73Q9NVV2 129 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 PRR13Q9NZ81 148 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 ZNF257Q9Y2Q1 563 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 FBXO7Q9Y3I1 522 aa7.2□□□□□ -1.26
VPS53-203ENST00000401468 A0A1B0GU03 582 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 TEX22C9J3V5 150 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 E7EUB6 86 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 AP4M1O00189 453 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 PPIFP30405 207 aaKnown RBP7.19□□□□□ -1.26
VPS53-203ENST00000401468 OR2B8PP59922 312 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 PLGLAQ15195 96 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 TATDN3Q17R31 274 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 ASPHD1Q5U4P2 390 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 SSX9Q7RTT3 188 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 H2BFWTQ7Z2G1 175 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 SLC35E3Q7Z769 313 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 COQ8AQ8NI60 647 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 SRSF12Q8WXF0 261 aaKnown RBP7.19□□□□□ -1.26
VPS53-203ENST00000401468 ARPC1AQ92747 370 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 GPR146Q96CH1 333 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 PHB2Q99623 299 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 NDUFA4L2Q9NRX3 87 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 FKBP11Q9NYL4 201 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 CACFD1Q9UGQ2 172 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 LINC00527Q9UJ94 153 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 PRNDQ9UKY0 176 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 BIRC6Q9NR09 4857 aa7.19□□□□□ -1.26
VPS53-203ENST00000401468 TEX50A0A1B0GTY4 177 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 ATP6V0E1O15342 81 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 VDAC2P45880 294 aaPredicted RBP7.18□□□□□ -1.26
VPS53-203ENST00000401468 AKR1C2P52895 323 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 RAB25P57735 213 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 FXYD3Q14802 87 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 IZUMO4Q1ZYL8 232 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 KHDC1LQ5JSQ8 128 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 GGNBP1Q5YKI7 109 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 STPG2Q8N412 459 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 C12orf45Q8N5I9 185 aaPredicted RBP7.18□□□□□ -1.26
VPS53-203ENST00000401468 RNF152Q8N8N0 203 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 CASTOR1Q8WTX7 329 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 RRNAD1Q96FB5 475 aaKnown RBP7.18□□□□□ -1.26
VPS53-203ENST00000401468 TMEM68Q96MH6 324 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 GPN1Q9HCN4 374 aaPredicted RBP7.18□□□□□ -1.26
VPS53-203ENST00000401468 HSPB7Q9UBY9 170 aa7.18□□□□□ -1.26
VPS53-203ENST00000401468 IGLC7A0M8Q6 106 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 NPIPB5A8MRT5 1133 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 MPTX1A8MV57 137 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 FAM90A26D6RGX4 464 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 ADAP1O75689 374 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 SNAPC5O75971 98 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 IGHG4P01861 327 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 CRYGCP07315 174 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 SULT1A3P0DMM9 295 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 SULT1A4P0DMN0 295 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 IGLL1P15814 213 aa7.17□□□□□ -1.26
VPS53-203ENST00000401468 RPL27AP46776 148 aaKnown RBP7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms