RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 M0R143 59 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 ESDP10768 282 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 RAB4AP20338 218 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 KIR2DS2P43631 304 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 IER3P46695 156 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 CCL11P51671 97 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 MMD2Q8IY49 270 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 FDCSPQ8NFU4 85 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 OR1L6Q8NGR2 347 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 PPP1R35Q8TAP8 253 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 FAM216AQ8WUB2 273 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 PLSCR4Q9NRQ2 329 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 V9GYV3 84 aa10.43□□□□□ -0.74
SHMT1-205ENST00000395684 TRAV9-1A0A075B6T8 112 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 FCN1O00602 326 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 SRSF6Q13247 344 aaKnown RBP10.42□□□□□ -0.74
SHMT1-205ENST00000395684 TPTE2P1Q5T6R2 138 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 ALKBH2Q6NS38 261 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 TOMM20LQ6UXN7 152 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 MOB3BQ86TA1 216 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 MOGAT3Q86VF5 341 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 OR2V2Q96R30 315 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 HINT2Q9BX68 163 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF71Q9NQZ8 489 aaPredicted RBP10.42□□□□□ -0.74
SHMT1-205ENST00000395684 IDI2-AS1Q9NZ38 188 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 NKX2-8O15522 239 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 TNFSF13O75888 250 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 CFHR2P36980 270 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 CDKN1AP38936 164 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 TPPP2P59282 170 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 PAFAH1B2P68402 229 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 MZT1Q08AG7 82 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 RAB31Q13636 194 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 DUX4L9Q6RFH8 374 aaPredicted RBP10.42□□□□□ -0.74
SHMT1-205ENST00000395684 NEUROG1Q92886 237 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 UHRF2Q96PU4 802 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 HSPB9Q9BQS6 159 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 LY96Q9Y6Y9 160 aa10.42□□□□□ -0.74
SHMT1-205ENST00000395684 EP300Q09472 2414 aaPredicted RBP10.42□□□□□ -0.74
SHMT1-205ENST00000395684 SNURFLB1AK76 121 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 MT-CO2P00403 227 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 AREGP15514 252 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 CRYBB3P26998 211 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 TDGF1P3P51864 188 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 RPEL1Q2QD12 228 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 PLA2G2CQ5R387 149 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 OR8I2Q8N0Y5 310 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 ST6GALNAC3Q8NDV1 305 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 CADP27708 2225 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 IGKV1OR2-108A0A075B7D4 117 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 A8MXE2 369 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 PRR33A8MZF0 331 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 LHBP01229 141 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 PSG5Q15238 335 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 CENPWQ5EE01 88 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 STARD4Q96DR4 205 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF503Q96F45 646 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 LRFN3Q9BTN0 628 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 ENY2Q9NPA8 101 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 SLC45A2Q9UMX9 530 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 CACNA1GO43497 2377 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 INTS1Q8N201 2190 aaKnown RBP10.41□□□□□ -0.74
SHMT1-205ENST00000395684 HELTA6NFD8 242 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 SPINK4O60575 86 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 SP9P0CG40 484 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 GATA2P23769 480 aaPredicted RBP10.41□□□□□ -0.74
SHMT1-205ENST00000395684 RAB7AP51149 207 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 TEX43Q6ZNM6 134 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 BAGE3Q86Y29 109 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 BAGE2Q86Y30 109 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 DOLPP1Q86YN1 238 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 LYG1Q8N1E2 194 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 NABP2Q9BQ15 211 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 DKK4Q9UBT3 224 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 OR51B2Q9Y5P1 312 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 SLC25A15Q9Y619 301 aa10.41□□□□□ -0.74
SHMT1-205ENST00000395684 KBTBD11-OT1A0A1B0GTJ5 212 aa10.4□□□□□ -0.74
SHMT1-205ENST00000395684 ITGB1BP1O14713 200 aa10.4□□□□□ -0.74
SHMT1-205ENST00000395684 SPRY3O43610 288 aa10.4□□□□□ -0.74
SHMT1-205ENST00000395684 MRPS11P82912 194 aaKnown RBP10.4□□□□□ -0.74
SHMT1-205ENST00000395684 Q0VG73 95 aa10.4□□□□□ -0.74
SHMT1-205ENST00000395684 ZNF705AQ6ZN79 300 aaPredicted RBP10.4□□□□□ -0.74
SHMT1-205ENST00000395684 PQLC2Q6ZP29 291 aa10.4□□□□□ -0.74
SHMT1-205ENST00000395684 BHLHA15Q7RTS1 189 aaPredicted RBP10.4□□□□□ -0.74
SHMT1-205ENST00000395684 RNASE7Q9H1E1 156 aaKnown RBP10.4□□□□□ -0.74
SHMT1-205ENST00000395684 G0S2P27469 103 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 GNG4P50150 75 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 ZNF83P51522 516 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 RANP62826 216 aaKnown RBP10.4□□□□□ -0.75
SHMT1-205ENST00000395684 MLANAQ16655 118 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 OR5AU1Q8NGC0 362 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 PARD6AQ9NPB6 346 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 RNF114Q9Y508 228 aa10.4□□□□□ -0.75
SHMT1-205ENST00000395684 SRRM4A7MD48 611 aaKnown RBP10.39□□□□□ -0.75
SHMT1-205ENST00000395684 J3QR06 171 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 COMPP49747 757 aaPredicted RBP10.39□□□□□ -0.75
SHMT1-205ENST00000395684 VN1R17PQ8TDU5 208 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 ITLN1Q8WWA0 313 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 GNB1LQ9BYB4 327 aa10.39□□□□□ -0.75
SHMT1-205ENST00000395684 SLC25A10Q9UBX3 287 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms