RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 A0A096LPE4 126 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 A0A1W2PPZ6 126 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 TRAPPC2LH3BP13 241 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.26□□□□□ -0.93
CUX1-204ENST00000393824 FCN1O00602 326 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 CLDN1O95832 211 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 LGALS4P56470 323 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 CEACAM21Q3KPI0 293 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 LDLRAD2Q5SZI1 272 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 DOLPP1Q86YN1 238 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 CNEP1R1Q8N9A8 125 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 OR1L1Q8NH94 360 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 OCC1Q8TAD7 63 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 GNB4Q9HAV0 340 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 TUBG2Q9NRH3 451 aa9.26□□□□□ -0.93
CUX1-204ENST00000393824 IGHV2-26A0A0B4J1V2 119 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 DPRXA6NFQ7 191 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 WDR1O75083 606 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 ARF6P62330 175 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 KLRB1Q12918 225 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 HLA-DRB5Q30154 266 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 GFRALQ6UXV0 394 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 C20orf204Q6ZNR8 217 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 BATF2Q8N1L9 274 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 OR10P1Q8NGE3 313 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 FAM57AQ8TBR7 257 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 FAM103A1Q9BTL3 118 aaKnown RBP9.25□□□□□ -0.93
CUX1-204ENST00000393824 SFXN3Q9BWM7 321 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 LIN7CQ9NUP9 197 aaKnown RBP9.25□□□□□ -0.93
CUX1-204ENST00000393824 DIDO1Q9BTC0 2240 aaKnown RBP9.25□□□□□ -0.93
CUX1-204ENST00000393824 IGHV1-69-2A0A0G2JMI3 117 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 A0A1W2PR80 420 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 C17orf112F2Z3M2 114 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 SS18L1O75177 396 aaPredicted RBP9.25□□□□□ -0.93
CUX1-204ENST00000393824 TNFSF4P23510 183 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 AMTP48728 403 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 FAM214BQ7L5A3 538 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 MCEMP1Q8IX19 187 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 FGFRL1Q8N441 504 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 APOBEC3DQ96AK3 386 aaPredicted RBP9.25□□□□□ -0.93
CUX1-204ENST00000393824 HS3ST6Q96QI5 342 aa9.25□□□□□ -0.93
CUX1-204ENST00000393824 A0A1W2PS18 150 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 SNURFLB1AK76 121 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 MT-ND6P03923 174 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 HINT1P49773 126 aaPredicted RBP9.24□□□□□ -0.93
CUX1-204ENST00000393824 RHOGP84095 191 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 TFF3Q07654 80 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 C19orf35Q6ZS72 473 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 Q6ZVH6 145 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 Q8N7P7 452 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 OR5A2Q8NGI9 324 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 KCNS1Q96KK3 526 aa9.24□□□□□ -0.93
CUX1-204ENST00000393824 MBD3L4A6NDZ8 208 aaPredicted RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 MBD3L3A6NE82 208 aaPredicted RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 MBD3L5A6NJ08 208 aaPredicted RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 C3orf79P0CE67 100 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 IER3P46695 156 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 Q5PR19 223 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 PRSS57Q6UWY2 283 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 MOB1BQ7L9L4 216 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 MBD3L2Q8NHZ7 208 aaPredicted RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 WFDC12Q8WWY7 111 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 UHRF2Q96PU4 802 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 MTCH1Q9NZJ7 389 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 MRPL27Q9P0M9 148 aaKnown RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 LY96Q9Y6Y9 160 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 SPTAN1Q13813 2472 aaKnown RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 MYO18BQ8IUG5 2567 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 IGLC7A0M8Q6 106 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 ZNF324O75467 553 aaPredicted RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 DEFA4P12838 97 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 ZNF83P51522 516 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 ARF1P84077 181 aaKnown RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 SPTBN1Q01082 2364 aaKnown RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 PMCHL1Q16048 86 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 NIT1Q86X76 327 aa9.23□□□□□ -0.93
CUX1-204ENST00000393824 BBC3Q96PG8 261 aaPredicted RBP9.23□□□□□ -0.93
CUX1-204ENST00000393824 K7ERU9 68 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 HSPB6O14558 160 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 S1PR2O95136 353 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 CGAP01215 116 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 COX19Q49B96 90 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 WDR73Q6P4I2 378 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 IL36RNQ9UBH0 155 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 PPP1R3CQ9UQK1 317 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 ZNF835Q9Y2P0 537 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 RNF212BA8MTL3 300 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 LYZL6O75951 148 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 P0C879 139 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 IGHV1-2P23083 117 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 THBS3P49746 956 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 PSG7Q13046 419 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 MMD2Q8IY49 270 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 OR4F17Q8NGA8 305 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 BCL2L2Q92843 193 aaPredicted RBP9.22□□□□□ -0.93
CUX1-204ENST00000393824 LINC00470Q9BZP3 86 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 FGF23Q9GZV9 251 aaPredicted RBP9.22□□□□□ -0.93
CUX1-204ENST00000393824 CADP27708 2225 aa9.22□□□□□ -0.93
CUX1-204ENST00000393824 USP9XQ93008 2570 aaPredicted RBP9.22□□□□□ -0.93
CUX1-204ENST00000393824 KMT2BQ9UMN6 2715 aaPredicted RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms