RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 OR4C13Q8NGP0 309 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 DERL1Q9BUN8 251 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 CACNA1GO43497 2377 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 PEAR1Q5VY43 1037 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 CCDC144NLQ6NUI1 221 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 B4E171 279 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 PEX7O00628 323 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 EMP1P54849 157 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 MEGF9Q9H1U4 602 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 DIDO1Q9BTC0 2240 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 WNK2Q9Y3S1 2297 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 CD55P08174 381 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 SPEM2Q0P670 501 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 ZNF71Q9NQZ8 489 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 TMEM242Q9NWH2 141 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 ZNF236Q9UL36 1845 aa16.51■□□□□ 0.23
CCDC88B-202ENST00000356786 A0A1B0GUT8 65 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 SUPT4H1P63272 117 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 TP53BP1Q12888 1972 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 MST1P26927 711 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 MIR17HGQ75NE6 70 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 LRTM2Q8N967 370 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 TRBV20OR9-2A0A075B6H5 130 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 SAPCD1Q5SSQ6 148 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 C1orf210Q8IVY1 113 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 PRELID3AQ96N28 172 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 SPOCK3Q9BQ16 436 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 TRPM7Q96QT4 1865 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 TRAV9-2A0A087WT02 112 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 DLEU1O43261 78 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 CX3CL1P78423 397 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 TRIP6Q15654 476 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 ZNRF1Q8ND25 227 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 ZNF837Q96EG3 531 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 C16orf92Q96LL3 132 aa16.5■□□□□ 0.23
CCDC88B-202ENST00000356786 A0A0A6YYD4 124 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 IZUMO1RA6ND01 250 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 HIGD1CA8MV81 97 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 MRPL13Q9BYD1 178 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 GATA2P23769 480 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 PHLDA3Q9Y5J5 127 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 GPR183P32249 361 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 IFI27L2Q9H2X8 130 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 MPDZO75970 2070 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 SCGB1A1P11684 91 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 HIST1H1AQ02539 215 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 RELQ04864 619 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 MRPL16Q9NX20 251 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 ZNF319Q9P2F9 582 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 RAXQ9Y2V3 346 aa16.49■□□□□ 0.23
CCDC88B-202ENST00000356786 A0A1W2PRS3 328 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 C19orf67A6NJJ6 358 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 LGALS3P17931 250 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 LURAP1LQ8IV03 231 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 OCC1Q8TAD7 63 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 MBD3L1Q8WWY6 194 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 NEUROG1Q92886 237 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 BEX4Q9NWD9 120 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 EP300Q09472 2414 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 TNFSF13O75888 250 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 ADCYAP1P18509 176 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 TSPAN7P41732 249 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 PCOLCEQ15113 449 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 VSIRQ9H7M9 311 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 MFAP4P55083 255 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 SAMD13Q5VXD3 122 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 OR10J6PQ8NGY7 276 aa16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 SSBP4Q9BWG4 385 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-202ENST00000356786 LHFPL1Q86WI0 220 aa16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 ZNF418Q8TF45 676 aaPredicted RBP16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 IGKV3D-11A0A0A0MRZ8 115 aa16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 MUC21A0A0G2JKD1 596 aa16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 MUC21A0A140T8X8 626 aa16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 MUC21Q5SSG8 566 aa16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 RPP21Q9H633 154 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-202ENST00000356786 CA1P00915 261 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 C1orf194Q5T5A4 169 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 BEND2Q8NDZ0 799 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 FAM131CQ96AQ9 280 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 JKAMPQ9P055 326 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 C5orf30Q96GV9 206 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 REPIN1Q9BWE0 567 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 FNDC4Q9H6D8 234 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 TYMSP04818 313 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 COX6A1P12074 109 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 TEX38Q6PEX7 206 aa16.46■□□□□ 0.23
CCDC88B-202ENST00000356786 TIAF1O95411 115 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 LOXL3P58215 753 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 PSG9Q00887 426 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 SOX21Q9Y651 276 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 GDF15Q99988 308 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 CHD5Q8TDI0 1954 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 IGHV3-35A0A0C4DH35 117 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 FAM53AQ6NSI3 398 aaPredicted RBP16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 AMMECR1LQ6DCA0 310 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 ZNF441Q8N8Z8 693 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 OR13A1Q8NGR1 328 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 POLEQ07864 2286 aa16.45■□□□□ 0.22
CCDC88B-202ENST00000356786 DLX6P56179 175 aa16.44■□□□□ 0.22
CCDC88B-202ENST00000356786 CDCP2Q5VXM1 449 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms