RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 ATP5IP56385 69 aaPredicted RBP18.08■□□□□ 0.48
UPF3A-201ENST00000351487 OR2T10Q8NGZ9 312 aa18.08■□□□□ 0.48
UPF3A-201ENST00000351487 ZGRF1Q86YA3 2104 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 PDZD11Q5EBL8 140 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 KCNIP4Q6PIL6 250 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 SSX8Q7RTT4 187 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 JKAMPQ9P055 326 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 TNCP24821 2201 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 SRRM4A7MD48 611 aaKnown RBP18.07■□□□□ 0.48
UPF3A-201ENST00000351487 THBDP07204 575 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 GCHFRP30047 84 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 LCN2P80188 198 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 SEPSECSQ9HD40 501 aaKnown RBP18.07■□□□□ 0.48
UPF3A-201ENST00000351487 FKBP11Q9NYL4 201 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 ZNRD1Q9P1U0 126 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 DMRT1Q9Y5R6 373 aa18.07■□□□□ 0.48
UPF3A-201ENST00000351487 RIF1Q5UIP0 2472 aaKnown RBP18.06■□□□□ 0.48
UPF3A-201ENST00000351487 BSPH1Q075Z2 132 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 COA6Q5JTJ3 125 aaKnown RBP18.06■□□□□ 0.48
UPF3A-201ENST00000351487 TMEM183AQ8IXX5 376 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 OR5B3Q8NH48 314 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 ABHD17AQ96GS6 310 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 IMMP2LQ96T52 175 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 HINT2Q9BX68 163 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 IGFBP2P18065 325 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 RPL31P62899 125 aaKnown RBP18.06■□□□□ 0.48
UPF3A-201ENST00000351487 DNLZQ5SXM8 178 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 OSR1Q8TAX0 266 aaPredicted RBP18.06■□□□□ 0.48
UPF3A-201ENST00000351487 CHODLQ9H9P2 273 aa18.06■□□□□ 0.48
UPF3A-201ENST00000351487 MGAQ8IWI9 3026 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 CEP250Q9BV73 2442 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 TRBV20OR9-2A0A075B6H5 130 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 SAA1P0DJI8 122 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-201ENST00000351487 CHRNA7P36544 502 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 ACTL10Q5JWF8 245 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 TMEM204Q9BSN7 226 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 TP53TG5Q9Y2B4 290 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 YTHDF2Q9Y5A9 579 aaKnown RBP18.05■□□□□ 0.48
UPF3A-201ENST00000351487 AKAP13Q12802 2813 aa18.05■□□□□ 0.48
UPF3A-201ENST00000351487 NBL1P41271 181 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 C2orf83Q53S99 150 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 SPATA31B1PQ5VZV4 182 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 TMEM144Q7Z5S9 345 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 ZNF714Q96N38 554 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 TEX50A0A1B0GTY4 177 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 SCO2A0A1W2PP80 73 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 FCN3O75636 299 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 LINC00869P0C866 280 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 FABP4P15090 132 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 Q8NA96 180 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 ZNF114Q8NC26 417 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 OR5T1Q8NG75 326 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 BTF3L4Q96K17 158 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 HIST1H2BLQ99880 126 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 SAP30LQ9HAJ7 183 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 SLC45A2Q9UMX9 530 aa18.04■□□□□ 0.48
UPF3A-201ENST00000351487 TMEM178BH3BS89 294 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 MT-CO2P00403 227 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 OR1L8Q8NGR8 309 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 C11orf52Q96A22 123 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 MRPL20Q9BYC9 149 aaKnown RBP18.03■□□□□ 0.48
UPF3A-201ENST00000351487 ARL2-SNX15V9GYD0 113 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 APOA2P02652 100 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 C1QTNF9P0C862 333 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 ZCCHC24Q8N2G6 241 aaKnown RBP18.03■□□□□ 0.48
UPF3A-201ENST00000351487 OR5AN1Q8NGI8 311 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 RND1Q92730 232 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 ACY3Q96HD9 319 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 ZNF835Q9Y2P0 537 aa18.03■□□□□ 0.48
UPF3A-201ENST00000351487 PPIAL4EA0A075B759 164 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 PPIAL4DF5H284 164 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 PPIAL4FP0DN26 164 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 CCL3L1P16619 93 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 CLEC12BQ2HXU8 276 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 OR1P1Q8NH06 330 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 SFRP2Q96HF1 295 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 PPIAL4AQ9Y536 164 aa18.02■□□□□ 0.48
UPF3A-201ENST00000351487 H0YJW9 148 aa18.02■□□□□ 0.47
UPF3A-201ENST00000351487 FOXL1Q12952 345 aa18.02■□□□□ 0.47
UPF3A-201ENST00000351487 FAM78BQ5VT40 261 aa18.02■□□□□ 0.47
UPF3A-201ENST00000351487 TMEM200BQ69YZ2 307 aa18.02■□□□□ 0.47
UPF3A-201ENST00000351487 CDPF1Q6NVV7 123 aa18.02■□□□□ 0.47
UPF3A-201ENST00000351487 PACRGQ96M98 296 aaPredicted RBP18.02■□□□□ 0.47
UPF3A-201ENST00000351487 AURKAIP1Q9NWT8 199 aaPredicted RBP18.02■□□□□ 0.47
UPF3A-201ENST00000351487 SSUH2Q9Y2M2 353 aa18.02■□□□□ 0.47
UPF3A-201ENST00000351487 PGPEP1LA6NFU8 196 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 TNFRSF13BO14836 293 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-201ENST00000351487 RNASE2P10153 161 aaKnown RBP18.01■□□□□ 0.47
UPF3A-201ENST00000351487 IL3RAP26951 378 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 PDLIM4P50479 330 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 TMEM177Q53S58 311 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 FAM71F2Q6NXP2 309 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 GFRALQ6UXV0 394 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 SLC35E1Q96K37 410 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 HARBI1Q96MB7 349 aa18.01■□□□□ 0.47
UPF3A-201ENST00000351487 ANKRD11Q6UB99 2663 aaPredicted RBP18.01■□□□□ 0.47
UPF3A-201ENST00000351487 MDFIC2A0A1B0GVS7 189 aa18■□□□□ 0.47
UPF3A-201ENST00000351487 HIST1H1BP16401 226 aaKnown RBP18■□□□□ 0.47
UPF3A-201ENST00000351487 FUT9Q9Y231 359 aa18■□□□□ 0.47
UPF3A-201ENST00000351487 ACACAQ13085 2346 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms