RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 HABP2Q14520 560 aaPredicted RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 MMDQ15546 238 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 VMA21Q3ZAQ7 101 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 FAM120AOSQ5T036 256 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 LILRB2Q8N423 598 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 EAF1Q96JC9 268 aaPredicted RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 CIB3Q96Q77 187 aaPredicted RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 AIFM2Q9BRQ8 373 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 GINS3Q9BRX5 216 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 COMMD5Q9GZQ3 224 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 SLC25A32Q9H2D1 315 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 HIPK2Q9H2X6 1198 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 PLEKHA3Q9HB20 300 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 HIF1ANQ9NWT6 349 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 METTL1Q9UBP6 276 aaKnown RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 ZNF257Q9Y2Q1 563 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 SIGLEC9Q9Y336 463 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 AUP1Q9Y679 476 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.31□□□□□ -1.88
MCF2-201ENST00000338585 FASNP49327 2511 aaKnown RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 GCN1Q92616 2671 aaKnown RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 UBE2L5PA0A1B0GUS4 154 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 B4DSR2 109 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 CA2P00918 260 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 REG1AP05451 166 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 SPP1P10451 314 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 ATP6V0CP27449 155 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 CD1BP29016 333 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 FHITP49789 147 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 RAB14P61106 215 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 GNB1P62873 340 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 HBG1P69891 147 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 HBG2P69892 147 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 WT1-ASQ06250 92 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 TNXAQ16473 311 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 PRSS8Q16651 343 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 MINOS1Q5TGZ0 78 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 C19orf35Q6ZS72 473 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 STPG2Q8N412 459 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 SLC24A4Q8NFF2 622 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 OR5B3Q8NH48 314 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 OR4A5Q8NH83 315 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 VSTM2AQ8TAG5 236 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 Q96MF0 132 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 TSNAXQ99598 290 aaKnown RBP3.31□□□□□ -1.88
MCF2-201ENST00000338585 RSG1Q9BU20 258 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 C7orf69Q9H7B7 122 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 NDUFA4L2Q9NRX3 87 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 MINOS1-NBL1R4GNA1 71 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 CELSR1Q9NYQ6 3014 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 CR1P17927 2039 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 NBPF19A0A087WUL8 3843 aa3.31□□□□□ -1.88
MCF2-201ENST00000338585 CCDC168Q8NDH2 2452 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 IGHV1-69DA0A0B4J2H0 117 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 A0A0U1RQK1 487 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 LINC00862A6NCI5 91 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 PRSS46E5RG02 174 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 NBR2O15453 112 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 FGF16O43320 207 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 MOSP00540 346 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 IGHV1-69P01742 117 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 OR8U8P0C7N1 319 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 AREGP15514 252 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 NPY1RP25929 384 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 EIF5AP63241 154 aaKnown RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 ZNF266Q14584 549 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 NDUFA5Q16718 116 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 KLF17Q5JT82 389 aaPredicted RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 ETV3LQ6ZN32 361 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 TMEM182Q6ZP80 229 aaPredicted RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 PPP1R27Q86WC6 154 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 TEX45Q8NA69 505 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 OR10P1Q8NGE3 313 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 OR1L8Q8NGR8 309 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 MALSU1Q96EH3 234 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 CITED4Q96RK1 184 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 REG4Q9BYZ8 158 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 ENY2Q9NPA8 101 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 FKBP11Q9NYL4 201 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 TBL2Q9Y4P3 447 aaKnown RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 CSPG4Q6UVK1 2322 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 CSMD1Q96PZ7 3565 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 IGLC7A0M8Q6 106 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 ZNF705EA8MWA4 302 aaPredicted RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 OOSP1A8MZH6 123 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 DFFBO76075 338 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 TGFAP01135 160 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 IFNA4P05014 189 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 SEC11BP0C7V7 166 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 IGHV4-31P0DP07 118 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 RNASE2P10153 161 aaKnown RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 LOXL1Q08397 574 aaPredicted RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 PLGLAQ15195 96 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 MLANAQ16655 118 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 C21orf62-AS1Q17RA5 79 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 LRRC75BQ2VPJ9 315 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 CCDC144NLQ6NUI1 221 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 SLC25A24Q6NUK1 477 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 COMMD7Q86VX2 200 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 LRRC75A-AS1Q8N1F1 130 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms