RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 LDLRAD4O15165 306 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 HS3ST3B1Q9Y662 390 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 CCL20P78556 96 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 CLEC7AQ9BXN2 247 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 PILRBQ9UKJ0 227 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 ZG16O60844 167 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 TIMM23BQ5SRD1 257 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 SLC25A45Q8N413 288 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 C9JCJ5 164 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 KIR2DL4Q99706 377 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 ABCA4P78363 2273 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 A1L4Q6 167 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 CCL4P13236 92 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF497Q6ZNH5 498 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 YPEL1O60688 119 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 TBX6O95947 436 aaPredicted RBP8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 MYF5P13349 255 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 KHDC1LQ5JSQ8 128 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 PNKDQ8N490 385 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF525Q8N782 197 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 PLPPR2Q96GM1 343 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 YPEL2Q96QA6 119 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 PRDM13Q9H4Q3 707 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 CREBBPQ92793 2442 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1W2PRE2 83 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 HIST1H4GQ99525 98 aa8.73□□□□□ -1.01
CCDC88A-202ENST00000336838 IQCF6A8MYZ5 107 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 FNDC10F2Z333 226 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 SRXN1Q9BYN0 137 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 PHLDA3Q9Y5J5 127 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 LMX1BO60663 402 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF324BQ6AW86 544 aaPredicted RBP8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 RPP21Q9H633 154 aaKnown RBP8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 LPAR2Q9HBW0 351 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 ID3Q02535 119 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 OR4X2Q8NGF9 303 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1B0GV90 55 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 A0A1W2PQM1 296 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 PEX7O00628 323 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 OR5A1Q8NGJ0 315 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 NPIPB11E5RHQ5 1161 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 H7C1H1 209 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 RTP5Q14D33 572 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 REG4Q9BYZ8 158 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 CBLN4Q9NTU7 201 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 COL6A6A6NMZ7 2263 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 NUDT3O95989 172 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 TMEM144Q7Z5S9 345 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 LURAP1LQ8IV03 231 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 SMOC1Q9H4F8 434 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 TMEM106BQ9NUM4 274 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 ZNF257Q9Y2Q1 563 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 LINC00312Q9Y6C7 94 aa8.72□□□□□ -1.01
CCDC88A-202ENST00000336838 DLX6P56179 175 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 C2orf16Q68DN1 1984 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 B9A039 149 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 WNT5AP41221 380 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 SPANXA1Q9NS26 97 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 OR4C46A6NHA9 309 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 CBLN1P23435 193 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 SEC11AP67812 179 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 PLPPR1Q8TBJ4 325 aa8.71□□□□□ -1.01
CCDC88A-202ENST00000336838 C15orf61A6NNL5 157 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 MSGN1A6NI15 193 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 CRYBB3P26998 211 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 SLC35B1P78383 322 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 PCSK4Q6UW60 755 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 TMEM208Q9BTX3 173 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 KBTBD11-OT1A0A1B0GTJ5 212 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 NIT1Q86X76 327 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 IFI27L2Q9H2X8 130 aa8.71□□□□□ -1.02
CCDC88A-202ENST00000336838 IL6RP08887 468 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 FAM53AQ6NSI3 398 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 ZNF600Q6ZNG1 722 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 ARL6IP6Q8N6S5 226 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 A0A1W2PR77 199 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 ORMDL3Q8N138 153 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 AICDAQ9GZX7 198 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 ANOS1P23352 680 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 RND2P52198 227 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 FREM1Q5H8C1 2179 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 SGK494Q96LW2 274 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 IGKV3D-15A0A087WSY6 115 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 PGPA6NDG6 321 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 COLCA2A8K830 154 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 HINT1P49773 126 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 EBLN2Q6P2I7 272 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 AURKAIP1Q9NWT8 199 aaPredicted RBP8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 SMPXQ9UHP9 88 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 LOC102723996A0A087X1L8 192 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 OR11H12B2RN74 326 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 E9PQ18 207 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 IL4P05112 153 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 CRIPAKQ8N1N5 446 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 OR11H1Q8NG94 326 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 OR11H2Q8NH07 326 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 TNFRSF14Q92956 283 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 C16orf92Q96LL3 132 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 EFEMP2O95967 443 aa8.7□□□□□ -1.02
CCDC88A-202ENST00000336838 DPF1Q92782 380 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms