RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 PTTG1IPP53801 180 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 MFAP2P55001 183 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 DLX1P56177 255 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 VAMP3Q15836 100 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF703Q9H7S9 590 aaPredicted RBP12.12□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF331Q9NQX6 463 aaPredicted RBP12.12□□□□□ -0.47
PTPN9-201ENST00000306726 IL36GQ9NZH8 169 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 GCGP01275 180 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 SPATA45Q537H7 98 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 Q6ZR03 302 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 YPEL4Q96NS1 127 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 P2RX4Q99571 388 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 TBL2Q9Y4P3 447 aaKnown RBP12.12□□□□□ -0.47
PTPN9-201ENST00000306726 YTHDF2Q9Y5A9 579 aaKnown RBP12.12□□□□□ -0.47
PTPN9-201ENST00000306726 DUX4L9Q6RFH8 374 aaPredicted RBP12.12□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF355PQ9NSJ1 428 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM140Q9NV12 185 aa12.12□□□□□ -0.47
PTPN9-201ENST00000306726 FOXF2Q12947 444 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 CENPWQ5EE01 88 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 STPG3Q8N7X2 389 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 NOL4LQ96MY1 436 aaPredicted RBP12.11□□□□□ -0.47
PTPN9-201ENST00000306726 PSMG3Q9BT73 122 aaPredicted RBP12.11□□□□□ -0.47
PTPN9-201ENST00000306726 CEACAM4O75871 244 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 RAB4AP20338 218 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM183BQ1AE95 376 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 RNFT1Q5M7Z0 435 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 ASCL4Q6XD76 172 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 GBGT1Q8N5D6 347 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 TRBV20OR9-2A0A075B6H5 130 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 PRDX2P32119 198 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 CCL8P80075 99 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 RELBQ01201 579 aa12.11□□□□□ -0.47
PTPN9-201ENST00000306726 CISD2Q8N5K1 135 aaKnown RBP12.11□□□□□ -0.47
PTPN9-201ENST00000306726 KLF13Q9Y2Y9 288 aaPredicted RBP12.11□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF292O60281 2723 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 ETV2O00321 342 aaPredicted RBP12.1□□□□□ -0.47
PTPN9-201ENST00000306726 NKX2-8O15522 239 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF766Q5HY98 468 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 KDF1Q8NAX2 398 aaPredicted RBP12.1□□□□□ -0.47
PTPN9-201ENST00000306726 OR10W1Q8NGF6 305 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 LSM10Q969L4 123 aaKnown RBP12.1□□□□□ -0.47
PTPN9-201ENST00000306726 NPY1RP25929 384 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 RND2P52198 227 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 RPEL1Q2QD12 228 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 Q6P435 159 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF497Q6ZNH5 498 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 SPACA3Q8IXA5 215 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 CCL13Q99616 98 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM208Q9BTX3 173 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 IGF2RP11717 2491 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 OOEPA6NGQ2 149 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM250H0YL14 139 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 HCP5Q6MZN7 132 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 Q6ZWC4 215 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM178AQ8NBL3 297 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 OR5B3Q8NH48 314 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 ZCCHC14Q8WYQ9 949 aaKnown RBP12.1□□□□□ -0.47
PTPN9-201ENST00000306726 ZNF835Q9Y2P0 537 aa12.1□□□□□ -0.47
PTPN9-201ENST00000306726 SH2D7A6NKC9 451 aaPredicted RBP12.09□□□□□ -0.47
PTPN9-201ENST00000306726 GFRA1P56159 465 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 SMIM21Q3B7S5 101 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 LEMD1Q68G75 181 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 ZC2HC1AQ96GY0 325 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 TAAR6Q96RI8 345 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 DNAJC4Q9NNZ3 241 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 TCF19Q9Y242 345 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 HCFC1P51610 2035 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 CPAMD8Q8IZJ3 1885 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 CA2P00918 260 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 IGLV2-14P01704 120 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 USF1P22415 310 aaPredicted RBP12.09□□□□□ -0.47
PTPN9-201ENST00000306726 CCKARP32238 428 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 UBE2L3P68036 154 aaKnown RBP12.09□□□□□ -0.47
PTPN9-201ENST00000306726 RBMXL3Q8N7X1 1067 aaKnown RBP12.09□□□□□ -0.47
PTPN9-201ENST00000306726 C11orf1Q9H5F2 150 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 S4R3C0 116 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 SMPD2O60906 423 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 MT-CO2P00403 227 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 C10orf55Q5SWW7 151 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 STUMQ69YW2 141 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 UNQ5815/PRO19632Q6UWF5 114 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 IGFL2Q6UWQ7 119 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 OR9G1Q8NH87 305 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 COQ2Q96H96 371 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 TMEM106BQ9NUM4 274 aa12.09□□□□□ -0.47
PTPN9-201ENST00000306726 A0A1B0GW64 132 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 A0A1W2PN81 502 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 K7ENP7 123 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 TMPRSS2O15393 492 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 IL6RP08887 468 aaPredicted RBP12.08□□□□□ -0.48
PTPN9-201ENST00000306726 PYYP10082 97 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 DEFB109BQ30KR1 87 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 INO80CQ6PI98 192 aaPredicted RBP12.08□□□□□ -0.48
PTPN9-201ENST00000306726 TREML4Q6UXN2 200 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 TMEM14EPQ6UXP3 125 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 C5orf30Q96GV9 206 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 SH2D2AQ9NP31 389 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 GCHFRP30047 84 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 OPRK1P41145 380 aa12.08□□□□□ -0.48
PTPN9-201ENST00000306726 GNG5P63218 68 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms