RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 REG1BP48304 166 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 DLX6P56179 175 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 TMEM155Q4W5P6 130 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 TMEM177Q53S58 311 aa19.51■□□□□ 0.71
TRIM54-201ENST00000296098 ROS1P08922 2347 aa19.5■□□□□ 0.71
TRIM54-201ENST00000296098 FBXL19-AS1Q494R0 122 aa19.5■□□□□ 0.71
TRIM54-201ENST00000296098 STPG3Q8N7X2 389 aa19.5■□□□□ 0.71
TRIM54-201ENST00000296098 LINC01560Q8TB33 94 aa19.5■□□□□ 0.71
TRIM54-201ENST00000296098 TMEM186Q96B77 213 aa19.5■□□□□ 0.71
TRIM54-201ENST00000296098 PLAUP00749 431 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 ARL14EPLP0DKL9 152 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 RPL23P62829 140 aaKnown RBP19.49■□□□□ 0.71
TRIM54-201ENST00000296098 FABP9Q0Z7S8 132 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 BSXQ3C1V8 233 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 ZNF98A6NK75 572 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 PDE6DO43924 150 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 STAG3L2P0CL84 134 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 STAG3L3P0CL85 134 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 CHRNB4P30926 498 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 ATP5IP56385 69 aaPredicted RBP19.49■□□□□ 0.71
TRIM54-201ENST00000296098 FLYWCH2Q96CP2 140 aaKnown RBP19.49■□□□□ 0.71
TRIM54-201ENST00000296098 SSX3Q99909 188 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 NABP2Q9BQ15 211 aa19.49■□□□□ 0.71
TRIM54-201ENST00000296098 AP4M1O00189 453 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 CXorf1O96002 111 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 RPL29P47914 159 aaKnown RBP19.48■□□□□ 0.71
TRIM54-201ENST00000296098 UBE2G2P60604 165 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 C2orf83Q53S99 150 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 SPNS3Q6ZMD2 512 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 PDPNQ86YL7 162 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 C12orf57Q99622 126 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 ARFGEF3Q5TH69 2177 aa19.48■□□□□ 0.71
TRIM54-201ENST00000296098 TLN1Q9Y490 2541 aaKnown RBP19.48■□□□□ 0.71
TRIM54-201ENST00000296098 A0A087X0M5 115 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 A0A1B0GX30 115 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 NHLH1Q02575 133 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 KIAA0141Q14154 515 aaPredicted RBP19.47■□□□□ 0.71
TRIM54-201ENST00000296098 ABHD5Q8WTS1 349 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 PKDREJQ9NTG1 2253 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 CCL21O00585 134 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 IGFBP2P18065 325 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 ATP5G3P48201 142 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 KLRB1Q12918 225 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 CST9LP1Q5W188 147 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 OR4C13Q8NGP0 309 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 OR9G1Q8NH87 305 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 FAM210BQ96KR6 192 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 COMMD5Q9GZQ3 224 aa19.47■□□□□ 0.71
TRIM54-201ENST00000296098 ZNF137PP52743 207 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 RHOBP62745 196 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 RPL8P62917 257 aaKnown RBP19.46■□□□□ 0.71
TRIM54-201ENST00000296098 DIAPH2-AS1Q14236 149 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 C16orf82Q7Z2V1 217 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 ST6GALNAC3Q8NDV1 305 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 OR1L8Q8NGR8 309 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 ST6GALNAC6Q969X2 333 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 TRBV23-1A0A0A0MS06 115 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 IGHV1-8P0DP01 117 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 RNASE2P10153 161 aaKnown RBP19.46■□□□□ 0.71
TRIM54-201ENST00000296098 USF1P22415 310 aaPredicted RBP19.46■□□□□ 0.71
TRIM54-201ENST00000296098 GRNP28799 593 aaKnown RBP19.46■□□□□ 0.71
TRIM54-201ENST00000296098 OR4A5Q8NH83 315 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 VSTM2AQ8TAG5 236 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 WASHC3Q9Y3C0 194 aa19.46■□□□□ 0.71
TRIM54-201ENST00000296098 F6UZH7 168 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 NPPCP23582 126 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 MEOX2P50222 304 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 PRR20EP86478 221 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 PRR20CP86479 221 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 PRR20DP86480 221 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 PRR20BP86481 221 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 PRR20AP86496 221 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 MUC15Q8N387 334 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 NDUFA4L2Q9NRX3 87 aa19.45■□□□□ 0.7
TRIM54-201ENST00000296098 VENTXO95231 258 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 TMEM144Q7Z5S9 345 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 TGIF2LXQ8IUE1 241 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 OR10W1Q8NGF6 305 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 TMEM167AQ8TBQ9 72 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 FAM122AQ96E09 287 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 TXNDC17Q9BRA2 123 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 PCGF1Q9BSM1 259 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 TRBV24-1A0A075B6N3 115 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 SIAH2O43255 324 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 S100A8P05109 93 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 GNB1P62873 340 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 OR51G1Q8NGK1 321 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 NANPQ8TBE9 248 aa19.44■□□□□ 0.7
TRIM54-201ENST00000296098 TMEM133Q9H2Q1 129 aa19.43■□□□□ 0.7
TRIM54-201ENST00000296098 SEPSECSQ9HD40 501 aaKnown RBP19.43■□□□□ 0.7
TRIM54-201ENST00000296098 H7BYZ3 331 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 TGOLN2O43493 480 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 IL3RAP26951 378 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 SPATA31B1PQ5VZV4 182 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 SLC45A2Q9UMX9 530 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 GCHFRP30047 84 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 ZNF672Q499Z4 452 aaPredicted RBP19.42■□□□□ 0.7
TRIM54-201ENST00000296098 MOB3BQ86TA1 216 aa19.42■□□□□ 0.7
TRIM54-201ENST00000296098 RALYQ9UKM9 306 aaKnown RBP19.42■□□□□ 0.7
TRIM54-201ENST00000296098 A0A1W2PN81 502 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms