RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MINOS1Q5TGZ0 78 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 HIST2H2BCQ6DN03 193 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 DYNAPQ8N1N2 210 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 CFHR4Q92496 578 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 CXorf58Q96LI9 332 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 HINT2Q9BX68 163 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 TPSG1Q9NRR2 321 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 FKBP11Q9NYL4 201 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 PLA2G2EQ9NZK7 142 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 ITGB1BP2Q9UKP3 347 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 MINOS1-NBL1R4GNA1 71 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 CELSR2Q9HCU4 2923 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 DFFBO76075 338 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 LGALS4P56470 323 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 PRCDQ00LT1 54 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 SSX2Q16385 188 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 EIF5AL1Q6IS14 154 aaKnown RBP13.56□□□□□ -0.24
CLN3-252ENST00000636907 C17orf50Q8WW18 174 aa13.56□□□□□ -0.24
CLN3-252ENST00000636907 TSNAXQ99598 290 aaKnown RBP13.56□□□□□ -0.24
CLN3-252ENST00000636907 BEX4Q9NWD9 120 aaPredicted RBP13.56□□□□□ -0.24
CLN3-252ENST00000636907 VENTXO95231 258 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 CRYGBP07316 175 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 CD1BP29016 333 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 SLC38A11Q08AI6 406 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 HABP2Q14520 560 aaPredicted RBP13.55□□□□□ -0.24
CLN3-252ENST00000636907 MRGPRG-AS1Q2M3A8 158 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 DEFB113Q30KQ7 82 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 LILRB2Q8N423 598 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 OR5B3Q8NH48 314 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 SH3BGRL3Q9H299 93 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 ZNF430Q9H8G1 570 aaPredicted RBP13.55□□□□□ -0.24
CLN3-252ENST00000636907 ENY2Q9NPA8 101 aa13.55□□□□□ -0.24
CLN3-252ENST00000636907 WNK2Q9Y3S1 2297 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 OOSP1A8MZH6 123 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 FGF16O43320 207 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 IFNA10P01566 189 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 FAM157CP0CG43 387 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 SPP1P10451 314 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 PSG5Q15238 335 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 THNSL2Q86YJ6 484 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 TEX45Q8NA69 505 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 COMMD5Q9GZQ3 224 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 PLEKHA3Q9HB20 300 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 TBL2Q9Y4P3 447 aaKnown RBP13.54□□□□□ -0.24
CLN3-252ENST00000636907 CENPEQ02224 2701 aa13.54□□□□□ -0.24
CLN3-252ENST00000636907 A0A096LNT2 108 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 RRHO14718 337 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 SEC11BP0C7V7 166 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 ATP6V0CP27449 155 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 RPP30P78346 268 aaKnown RBP13.53□□□□□ -0.24
CLN3-252ENST00000636907 LRRC75A-AS1Q8N1F1 130 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 RNF141Q8WVD5 230 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 TMEM170AQ8WVE7 144 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 RNF5Q99942 180 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 NDUFA4L2Q9NRX3 87 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 RFNGQ9Y644 331 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 PTPN13Q12923 2485 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 DOPEY2Q9Y3R5 2298 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 ANKRD17O75179 2603 aaKnown RBP13.53□□□□□ -0.24
CLN3-252ENST00000636907 CENPVL3A0A0U1RRI6 287 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 E7EUB6 86 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 IFNA5P01569 189 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 IGKV1D-33P01593 117 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 IGKV1-33P01594 117 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 MSMBP08118 114 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 PJVKQ0ZLH3 352 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 C10orf55Q5SWW7 151 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 CCDC144NLQ6NUI1 221 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 OR10P1Q8NGE3 313 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 OR1L8Q8NGR8 309 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 AJUBAQ96IF1 538 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 AUP1Q9Y679 476 aa13.53□□□□□ -0.24
CLN3-252ENST00000636907 CSMD2Q7Z408 3487 aa13.52□□□□□ -0.24
CLN3-252ENST00000636907 POLQO75417 2590 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 OR8U8P0C7N1 319 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 CD24P25063 80 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 SULT1A2P50226 295 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 RUNX1Q01196 453 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 SLC25A24Q6NUK1 477 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 SLC24A4Q8NFF2 622 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 OR10W1Q8NGF6 305 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 LRRC20Q8TCA0 184 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 PINX1Q96BK5 328 aaKnown RBP13.52□□□□□ -0.25
CLN3-252ENST00000636907 METTL1Q9UBP6 276 aaKnown RBP13.52□□□□□ -0.25
CLN3-252ENST00000636907 SIGLEC9Q9Y336 463 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 TNCP24821 2201 aa13.52□□□□□ -0.25
CLN3-252ENST00000636907 CGB1A6NKQ9 187 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 SAA4P35542 130 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 HNF4GQ14541 408 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 PRSS8Q16651 343 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 ATP6V1FQ16864 119 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 FBLN7Q53RD9 439 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 COMMD7Q86VX2 200 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 MMD2Q8IY49 270 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 MALSU1Q96EH3 234 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 FBXL15Q9H469 300 aa13.51□□□□□ -0.25
CLN3-252ENST00000636907 UBE2L5PA0A1B0GUS4 154 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 ZNF705EA8MWA4 302 aaPredicted RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 B4DSR2 109 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 NPFFO15130 113 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms