RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CLEC12BQ2HXU8 276 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 OR4A47Q6IF82 309 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 IGFL3Q6UXB1 125 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 ZNF114Q8NC26 417 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 SLC24A4Q8NFF2 622 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 TMEM204Q9BSN7 226 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 PARD6AQ9NPB6 346 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 IDI2-AS1Q9NZ38 188 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 RNF7Q9UBF6 113 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 FUT9Q9Y231 359 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 FAM215AQ9Y5M1 114 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 C1QTNF9P0C862 333 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 TMEM30BQ3MIR4 351 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 FAM78BQ5VT40 261 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 TEPPQ6URK8 271 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 TCF23Q7RTU1 214 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 LEAP2Q969E1 77 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 SFRP2Q96HF1 295 aa10.49□□□□□ -0.73
LINC00540-203ENST00000631321 TRBV20OR9-2A0A075B6H5 130 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 TRGV10A0A0A0MS01 117 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 GZMBP10144 247 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 BMP5P22003 454 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 GCHFRP30047 84 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 MRPS11P82912 194 aaKnown RBP10.48□□□□□ -0.73
LINC00540-203ENST00000631321 DEFA6Q01524 100 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 FAM201AQ5SY85 155 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 OR5T1Q8NG75 326 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 TMEM37Q8WXS4 190 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 CORO2AQ92828 525 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 SFXN3Q9BWM7 321 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 CA2P00918 260 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 GPX4P36969 197 aaPredicted RBP10.48□□□□□ -0.73
LINC00540-203ENST00000631321 RHOBP62745 196 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 PRR20EP86478 221 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 PRR20CP86479 221 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 PRR20DP86480 221 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 PRR20BP86481 221 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 PRR20AP86496 221 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 EFNB3Q15768 340 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 STPG3Q8N7X2 389 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 NEUROG1Q92886 237 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 C11orf52Q96A22 123 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 GAFA1Q96PS6 74 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 GCM1Q9NP62 436 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 IL19Q9UHD0 177 aa10.48□□□□□ -0.73
LINC00540-203ENST00000631321 YTHDF2Q9Y5A9 579 aaKnown RBP10.48□□□□□ -0.73
LINC00540-203ENST00000631321 HCFC1P51610 2035 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 SCO2A0A1W2PP80 73 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 TIMP3P35625 211 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 RAB31Q13636 194 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 C1orf185Q5T7R7 199 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 SSMEM1Q8WWF3 244 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 ZCCHC14Q8WYQ9 949 aaKnown RBP10.47□□□□□ -0.73
LINC00540-203ENST00000631321 ENY2Q9NPA8 101 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 PRNDQ9UKY0 176 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 ZNF257Q9Y2Q1 563 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 SPENQ96T58 3664 aaKnown RBP10.47□□□□□ -0.73
LINC00540-203ENST00000631321 TM4SF5O14894 197 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 GCGP01275 180 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 IGHV1-46P01743 117 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 DUX4L9Q6RFH8 374 aaPredicted RBP10.47□□□□□ -0.73
LINC00540-203ENST00000631321 VHLLQ6RSH7 139 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 ELOVL5Q9NYP7 299 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 ARL2-SNX15V9GYD0 113 aa10.47□□□□□ -0.73
LINC00540-203ENST00000631321 MDFIC2A0A1B0GVS7 189 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 TSTD3H0UI37 97 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 MKRN2OSH3BPM6 223 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 AREGP15514 252 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 CNN1P51911 297 aaKnown RBP10.46□□□□□ -0.73
LINC00540-203ENST00000631321 SPATA31B1PQ5VZV4 182 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 ALKBH2Q6NS38 261 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 ZNF788Q6ZQV5 615 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 LYG1Q8N1E2 194 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 RPRMLQ8N4K4 120 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 C14orf144Q96I85 54 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 SEPSECSQ9HD40 501 aaKnown RBP10.46□□□□□ -0.73
LINC00540-203ENST00000631321 AURKAIP1Q9NWT8 199 aaPredicted RBP10.46□□□□□ -0.73
LINC00540-203ENST00000631321 OR51B2Q9Y5P1 312 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 LY96Q9Y6Y9 160 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 LOC400499M0QZD8 3231 aa10.46□□□□□ -0.73
LINC00540-203ENST00000631321 A0A0U1RQK1 487 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 ZNF320A2RRD8 509 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 PGPEP1LA6NFU8 196 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 CACNA1HO95180 2353 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 MT-CO2P00403 227 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 LINC00869P0C866 280 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 DDTP30046 118 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 ATP5IP56385 69 aaPredicted RBP10.46□□□□□ -0.74
LINC00540-203ENST00000631321 SELENOVP59797 346 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 TNFAIP6P98066 277 aaPredicted RBP10.46□□□□□ -0.74
LINC00540-203ENST00000631321 TEX38Q6PEX7 206 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 Q6ZS92 163 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 SLC25A48Q6ZT89 311 aaKnown RBP10.46□□□□□ -0.74
LINC00540-203ENST00000631321 REC114Q7Z4M0 266 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 LINC00469Q8N7U9 141 aa10.46□□□□□ -0.74
LINC00540-203ENST00000631321 SLC25A10Q9UBX3 287 aaPredicted RBP10.46□□□□□ -0.74
LINC00540-203ENST00000631321 RPUSD1Q9UJJ7 312 aaKnown RBP10.46□□□□□ -0.74
LINC00540-203ENST00000631321 HEATR1Q9H583 2144 aaKnown RBP10.45□□□□□ -0.74
LINC00540-203ENST00000631321 TRAV9-1A0A075B6T8 112 aa10.45□□□□□ -0.74
LINC00540-203ENST00000631321 C9JCJ5 164 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms