RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 MBD3L3A6NE82 208 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 MBD3L5A6NJ08 208 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 SOX15O60248 233 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 JOSD1Q15040 202 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 OR4A47Q6IF82 309 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 CISD2Q8N5K1 135 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 MBD3L2Q8NHZ7 208 aaPredicted RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 RNASEH2CQ8TDP1 164 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 ACY3Q96HD9 319 aa16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 SEPSECSQ9HD40 501 aaKnown RBP16.65■□□□□ 0.26
SHKBP1-225ENST00000600733 F6UZH7 168 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 DVL1O14640 695 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 CXorf1O96002 111 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 HNF1AP20823 631 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 KIR2DS2P43631 304 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 PKIAP61925 76 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 SPATA31B1PQ5VZV4 182 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 OR5R1Q8NH85 324 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 FAM216AQ8WUB2 273 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 C14orf144Q96I85 54 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 NPVFQ9HCQ7 196 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 YTHDF2Q9Y5A9 579 aaKnown RBP16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 TANC2Q9HCD6 1990 aa16.64■□□□□ 0.25
SHKBP1-225ENST00000600733 TRGV8A0A0C4DH27 118 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 IL6RP08887 468 aaPredicted RBP16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 PDLIM4P50479 330 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 TNCP24821 2201 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 YLPM1P49750 1951 aaKnown RBP16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 CD99P14209 185 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 RAB7AP51149 207 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 LCN2P80188 198 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 LYG1Q8N1E2 194 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 SLC24A4Q8NFF2 622 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 SFRP2Q96HF1 295 aa16.63■□□□□ 0.25
SHKBP1-225ENST00000600733 A0A0U1RQK1 487 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 KBTBD11-OT1A0A1B0GTJ5 212 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 ZNF320A2RRD8 509 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 NPY1RP25929 384 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 GLRXP35754 106 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 TMEM144Q7Z5S9 345 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 STPG3Q8N7X2 389 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 DEFB108BQ8NET1 73 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 HINT2Q9BX68 163 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 TMEM14BQ9NUH8 114 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 RAI1Q7Z5J4 1906 aaPredicted RBP16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 TSTD3H0UI37 97 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 DDTP30046 118 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 EFNB3Q15768 340 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 TIMM23BQ5SRD1 257 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 SGMS2Q8NHU3 365 aa16.62■□□□□ 0.25
SHKBP1-225ENST00000600733 CA2P00918 260 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 GNG10P50151 68 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 RPL15P61313 204 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 TEPPQ6URK8 271 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 TCF23Q7RTU1 214 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 PARD6AQ9NPB6 346 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 IDI2-AS1Q9NZ38 188 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 FOXA2Q9Y261 457 aaPredicted RBP16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 FOXH1O75593 365 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 HSPE1P61604 102 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 MRPS11P82912 194 aaKnown RBP16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 WFIKKN1Q96NZ8 548 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 GCM1Q9NP62 436 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 FAM215AQ9Y5M1 114 aa16.61■□□□□ 0.25
SHKBP1-225ENST00000600733 GCHFRP30047 84 aa16.6■□□□□ 0.25
SHKBP1-225ENST00000600733 OCC1Q8TAD7 63 aa16.6■□□□□ 0.25
SHKBP1-225ENST00000600733 IGLV3-9A0A075B6K5 115 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 A0A087X0M5 115 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 TRGV10A0A0A0MS01 117 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 MDFIC2A0A1B0GVS7 189 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 A0A1B0GX30 115 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 MMP23AO75900 390 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 CNN1P51911 297 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 FAM122AQ96E09 287 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 ZNRD1Q9P1U0 126 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 TRAPPC1Q9Y5R8 145 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 CEP250Q9BV73 2442 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 ITGB1BP1O14713 200 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 IGFBP2P18065 325 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 THBS3P49746 956 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 FOXL1Q12952 345 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 C22orf34Q6ZV56 151 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 ZADH2Q8N4Q0 377 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 SNRNP40Q96DI7 357 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 TXNDC17Q9BRA2 123 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 ENY2Q9NPA8 101 aa16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 MAP1BP46821 2468 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-225ENST00000600733 A0A1B0GUS0 222 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 RPL31P62899 125 aaKnown RBP16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 FAM216BQ8N7L0 139 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 ZNF439Q8NDP4 499 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 FAM222BQ8WU58 562 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 ZCCHC14Q8WYQ9 949 aaKnown RBP16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 CCL13Q99616 98 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 ELOVL5Q9NYP7 299 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 RNF7Q9UBF6 113 aa16.58■□□□□ 0.25
SHKBP1-225ENST00000600733 ZNF705GA8MUZ8 300 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-225ENST00000600733 RHOBP62745 196 aa16.58■□□□□ 0.24
SHKBP1-225ENST00000600733 STUMQ69YW2 141 aa16.58■□□□□ 0.24
SHKBP1-225ENST00000600733 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms