RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 LHX2P50458 406 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 UNC13CQ8NB66 2214 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 UMODP07911 640 aa17.29■□□□□ 0.36
UPF1-207ENST00000599848 FUT5Q11128 374 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 LINC00305Q7Z4B0 112 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 PSMG3Q9BT73 122 aaPredicted RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 TRBV20OR9-2A0A075B6H5 130 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 C7orf77A4D0Y5 90 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 RBMY1BA6NDE4 496 aaKnown RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 RBMY1EA6NEQ0 496 aaKnown RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 RBMY1DP0C7P1 496 aaKnown RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 RBMY1A1P0DJD3 496 aaKnown RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 RBMY1CP0DJD4 496 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 GATA3P23771 443 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 NSUN5P1Q3KNT7 163 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 C12orf57Q99622 126 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 V9GYH0 126 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 ZNF880Q6PDB4 577 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 WDR90Q96KV7 1748 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 C12orf77C9JDV5 145 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 RPL24P83731 157 aaKnown RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 PSG7Q13046 419 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 REPIN1Q9BWE0 567 aaKnown RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 SOX21Q9Y651 276 aaPredicted RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 CA2P00918 260 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 UBE2V2Q15819 145 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 CIARTQ8N365 385 aaPredicted RBP17.28■□□□□ 0.36
UPF1-207ENST00000599848 C1QTNF4Q9BXJ3 329 aa17.28■□□□□ 0.36
UPF1-207ENST00000599848 PSMB11A5LHX3 300 aa17.27■□□□□ 0.36
UPF1-207ENST00000599848 CD33P20138 364 aa17.27■□□□□ 0.36
UPF1-207ENST00000599848 MCM3APO60318 1980 aa17.27■□□□□ 0.36
UPF1-207ENST00000599848 GNLYP22749 145 aa17.27■□□□□ 0.36
UPF1-207ENST00000599848 FOXA2Q9Y261 457 aaPredicted RBP17.27■□□□□ 0.36
UPF1-207ENST00000599848 IGLV3-32A0A0A0MS00 114 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 TMEM14DPA8MWL7 114 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 ZNF688P0C7X2 276 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 RND3P61587 244 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 CYB561D1Q8N8Q1 229 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 CACNG7P62955 275 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 ASCL2Q99929 193 aa17.27■□□□□ 0.35
UPF1-207ENST00000599848 DEFB121Q5J5C9 76 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 PGLYRP4Q96LB8 373 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 AQP10Q96PS8 301 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 HLA-DRB1P01911 266 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 MIXL1Q9H2W2 232 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 ZP1P60852 638 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 AMELYQ99218 206 aa17.26■□□□□ 0.35
UPF1-207ENST00000599848 YPEL1O60688 119 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 LEPROTL1O95214 131 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 NBEAP1P0C6P0 100 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 ICAM4Q14773 271 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 MBNL2Q5VZF2 373 aaKnown RBP17.25■□□□□ 0.35
UPF1-207ENST00000599848 YPEL2Q96QA6 119 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 TRGV4A0A0C4DH28 118 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 SLC25A20O43772 301 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 OR9G9P0C7N8 305 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 TRAV14DV4A0A0A6YYC5 116 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 ATP5LO75964 103 aa17.25■□□□□ 0.35
UPF1-207ENST00000599848 LINC01549A6NIU2 74 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 PRSS53Q2L4Q9 553 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 RNF5Q99942 180 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 TRAV40A0A0B4J280 105 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 E9PQ18 207 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 ERVH48-1M5A8F1 160 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 CNTFRP26992 372 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 PMCHL2Q9BQD1 86 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 TM2D1Q9BX74 207 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 LMX1BO60663 402 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 RNASE1P07998 156 aaKnown RBP17.24■□□□□ 0.35
UPF1-207ENST00000599848 ARL14EPLP0DKL9 152 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 P2RY4P51582 365 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 LINC01356Q8N9X3 169 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 A0A1W2PP11 408 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 DIRC3C9JPN6 131 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 EMP1P54849 157 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 PEAR1Q5VY43 1037 aaPredicted RBP17.24■□□□□ 0.35
UPF1-207ENST00000599848 FMC1Q96HJ9 113 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 PLSCR2Q9NRY7 297 aa17.24■□□□□ 0.35
UPF1-207ENST00000599848 TRIP12Q14669 1992 aaPredicted RBP17.23■□□□□ 0.35
UPF1-207ENST00000599848 MRPL20Q9BYC9 149 aaKnown RBP17.23■□□□□ 0.35
UPF1-207ENST00000599848 KIR3DL3Q8N743 410 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 WNT10AQ9GZT5 417 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 OVOL1O14753 267 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 GCHFRP30047 84 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 NPBWR2P48146 333 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 RPL39P5Q59GN2 51 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 ST6GAL2Q96JF0 529 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 PRADC1Q9BSG0 188 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 SAP30O75446 220 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 CRYBA2P53672 197 aa17.23■□□□□ 0.35
UPF1-207ENST00000599848 RUNX1Q01196 453 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 TCF23Q7RTU1 214 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 TRAV24A0A0B4J272 114 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 IGHV3-11P01762 117 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 SIGIRRQ6IA17 410 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 KLF4O43474 513 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 TMEM42Q69YG0 159 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 ZNF818PQ6ZRF7 136 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 ATG2BQ96BY7 2078 aa17.22■□□□□ 0.35
UPF1-207ENST00000599848 HIST1H4GQ99525 98 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms