RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 USMG5Q96IX5 58 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 COA4Q9NYJ1 87 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 RSL24D1Q9UHA3 163 aaKnown RBP12.43□□□□□ -0.42
TRIM28-213ENST00000598355 ZNF257Q9Y2Q1 563 aa12.43□□□□□ -0.42
TRIM28-213ENST00000598355 TRAV3A0A0B4J244 114 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 HMX3A6NHT5 357 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 FAM223BA6NKX1 122 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 IFNA6P05013 189 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 CRYGCP07315 174 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 HOXD3P31249 432 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-213ENST00000598355 RAB25P57735 213 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 OR2B8PP59922 312 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 IL18Q14116 193 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 C9orf66Q5T8R8 295 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 TBC1D26Q86UD7 250 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 SLC25A42Q86VD7 318 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 FAM223AQ8IWN6 122 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 DCUN1D4Q92564 292 aa12.42□□□□□ -0.42
TRIM28-213ENST00000598355 SRSF8Q9BRL6 282 aaKnown RBP12.42□□□□□ -0.42
TRIM28-213ENST00000598355 IGLC7A0M8Q6 106 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 MPPED1O15442 326 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 RAB3DO95716 219 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 MYOD1P15172 320 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 CTRB1P17538 263 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 S100GP29377 79 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 LPAR6P43657 344 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 SLURP1P55000 103 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 DEFA5Q01523 94 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 MEF2DQ14814 521 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 CTRB2Q6GPI1 263 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 TERB2Q8NHR7 220 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 DPF1Q92782 380 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 DLX4Q92988 240 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-213ENST00000598355 HRASLSQ9HDD0 168 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 AKIP1Q9NQ31 210 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 ZNF355PQ9NSJ1 428 aa12.41□□□□□ -0.42
TRIM28-213ENST00000598355 C13orf42A0A1B0GVH6 325 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 ANKRD20A5PA0PJZ0 165 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 SEC14L6B5MCN3 397 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 OVOL1O14753 267 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 IGKV1-39P01597 117 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 IGKV1D-39P04432 117 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 AREGP15514 252 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 INSL3P51460 131 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 ERVK-16P61578 105 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 RHOGP84095 191 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 THOC7Q6I9Y2 204 aaKnown RBP12.4□□□□□ -0.42
TRIM28-213ENST00000598355 DMBX1Q8NFW5 382 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 OR4C16Q8NGL9 310 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 SEC22AQ96IW7 307 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 FANCD2OSQ96PS1 177 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 FYTTD1Q96QD9 318 aaKnown RBP12.4□□□□□ -0.42
TRIM28-213ENST00000598355 RANGRFQ9HD47 186 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-213ENST00000598355 SLC2A8Q9NY64 477 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 V9GYH0 126 aa12.4□□□□□ -0.42
TRIM28-213ENST00000598355 H0Y980 276 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 K7EIL1 84 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 PRH1P02810 166 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 PSMB6P28072 239 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 PPP5CP53041 499 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 PIGPP57054 158 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 FAAP20Q6NZ36 180 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 ACSM6Q6P461 480 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 NECAP1Q8NC96 275 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 TRIM63Q969Q1 353 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 TMEM14BQ9NUH8 114 aa12.39□□□□□ -0.43
TRIM28-213ENST00000598355 CCDC160A6NGH7 325 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 KRASP01116 189 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 TRBV12-3P01733 135 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 AKAIN1P0CW23 69 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 RPA2P15927 270 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 ZP3P21754 424 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 G6PCP35575 357 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 ECI1P42126 302 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 EXOSC2Q13868 293 aaKnown RBP12.38□□□□□ -0.43
TRIM28-213ENST00000598355 SURF2Q15527 256 aaPredicted RBP12.38□□□□□ -0.43
TRIM28-213ENST00000598355 ZNF79Q15937 498 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 C19orf35Q6ZS72 473 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 CCDC190Q86UF4 302 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 OR13C8Q8NGS7 320 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 QTRT1Q9BXR0 403 aaKnown RBP12.38□□□□□ -0.43
TRIM28-213ENST00000598355 COMMD5Q9GZQ3 224 aa12.38□□□□□ -0.43
TRIM28-213ENST00000598355 IGLV11-55A0A075B6I3 123 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 WI2-2373I1.2A0A1W2PRP0 233 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 FABP12A6NFH5 140 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 C15orf61A6NNL5 157 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 CTSDP07339 412 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-213ENST00000598355 P0C879 139 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 PGAM2P15259 253 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 PI3P19957 117 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 KLF5Q13887 457 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-213ENST00000598355 FAM209BQ5JX69 171 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 HSD17B13Q7Z5P4 300 aaPredicted RBP12.37□□□□□ -0.43
TRIM28-213ENST00000598355 ZFAND1Q8TCF1 268 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 MARCH1Q8TCQ1 289 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 MRAPQ8TCY5 172 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 TP53RKQ96S44 253 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 TSC22D3Q99576 134 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 NDUFA4L2Q9NRX3 87 aa12.37□□□□□ -0.43
TRIM28-213ENST00000598355 PEF1Q9UBV8 284 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms