RNA–Protein interactions for RNA: ENST00000594661.5

PNKP-204, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 2,111 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-204	ENST00000594661	RNF114	Q9Y508	228 aa		12.82	□□□□□ -0.36
PNKP-204	ENST00000594661	ATP23	Q9Y6H3	246 aa		12.82	□□□□□ -0.36
PNKP-204	ENST00000594661	TMEM56-RWDD3	S4R434	201 aa		12.82	□□□□□ -0.36
PNKP-204	ENST00000594661	IGLC7	A0M8Q6	106 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	GRIFIN	A4D1Z8	144 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661		M0R1B8	84 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	WNT2	P09544	360 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	GNRHR	P30968	328 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	MDH2	P40926	338 aa	Known RBP	12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	FAM27E3	Q08E93	113 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	VAMP3	Q15836	100 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	SPIN3	Q5JUX0	258 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	MRPL30	Q8TCC3	161 aa	Known RBP	12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	CLUHP3	Q96NS8	147 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	ELOVL5	Q9NYP7	299 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	ZZEF1	O43149	2961 aa		12.81	□□□□□ -0.36
PNKP-204	ENST00000594661	CDIPT	O14735	213 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	MPPED1	O15442	326 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	TIMM8A	O60220	97 aa	Predicted RBP	12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	KITLG	P21583	273 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	SERF2	P84101	59 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661		Q0VG73	95 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	CXorf66	Q5JRM2	361 aa	Predicted RBP	12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	PRSS57	Q6UWY2	283 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	MEX3B	Q6ZN04	569 aa	Known RBP	12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	C20orf204	Q6ZNR8	217 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661		Q6ZR03	302 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	C22orf34	Q6ZV56	151 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	ZNF586	Q9NXT0	402 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	ZNF835	Q9Y2P0	537 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	C3orf85	A0A1B0GTC6	90 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	DEGS1	O15121	323 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	GRP	P07492	148 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	UCN	P55089	124 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	MSMP	Q1L6U9	139 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	ZNF718	Q3SXZ3	478 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	FFAR4	Q5NUL3	377 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	TCF24	Q7RTU0	167 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	TCTEX1D1	Q8N7M0	179 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	RSG1	Q9BU20	258 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	TMEM222	Q9H0R3	208 aa		12.8	□□□□□ -0.36
PNKP-204	ENST00000594661	IGKV1-6	A0A0C4DH72	117 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	PSG1	P11464	419 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	PAX9	P55771	341 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	ERVK11-1	P61568	191 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	MBNL2	Q5VZF2	373 aa	Known RBP	12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	PRR27	Q6MZM9	219 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	POLDIP2	Q9Y2S7	368 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	TLN1	Q9Y490	2541 aa	Known RBP	12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	HEATR1	Q9H583	2144 aa	Known RBP	12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	IGKV1D-13	A0A0B4J2D9	117 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	IGKV1-13	P0DP09	117 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	CRISP2	P16562	243 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	LRRC10	Q5BKY1	277 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	ZNF818P	Q6ZRF7	136 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	TBC1D26	Q86UD7	250 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	PINX1	Q96BK5	328 aa	Known RBP	12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	SAMD10	Q9BYL1	202 aa		12.79	□□□□□ -0.36
PNKP-204	ENST00000594661	TRBV6-6	A0A0A6YYG2	114 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	TUSC2	O75896	110 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	GPX1	P07203	203 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	PSMB3	P49720	205 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	KRTDAP	P60985	99 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	SMIM21	Q3B7S5	101 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661		Q6P435	159 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661		Q8IYB0	196 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	GAPT	Q8N292	157 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	SIGLECL1	Q8N7X8	197 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	UHRF2	Q96PU4	802 aa		12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	UBE2J1	Q9Y385	318 aa	Predicted RBP	12.78	□□□□□ -0.36
PNKP-204	ENST00000594661	SIRPB1	O00241	398 aa		12.77	□□□□□ -0.36
PNKP-204	ENST00000594661	HOXA4	Q00056	320 aa	Predicted RBP	12.77	□□□□□ -0.36
PNKP-204	ENST00000594661	ZNF826P	Q6ZT77	177 aa		12.77	□□□□□ -0.36
PNKP-204	ENST00000594661	C11orf53	Q8IXP5	236 aa		12.77	□□□□□ -0.36
PNKP-204	ENST00000594661	SCGB1C1	Q8TD33	95 aa		12.77	□□□□□ -0.36
PNKP-204	ENST00000594661	GPHA2	Q96T91	129 aa		12.77	□□□□□ -0.36
PNKP-204	ENST00000594661	TRAV34	A0A0B4J273	112 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	CHST1	O43916	411 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	PRAMEF6	Q5VXH4	476 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	TCF23	Q7RTU1	214 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	MUC15	Q8N387	334 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	LHX4	Q969G2	390 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	CXXC4	Q9H2H0	198 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	CCL28	Q9NRJ3	127 aa		12.77	□□□□□ -0.37
PNKP-204	ENST00000594661	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	12.76	□□□□□ -0.37
PNKP-204	ENST00000594661		A6NJY4	79 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	SLC33A1	O00400	549 aa	Predicted RBP	12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	ADAM20	O43506	726 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	ZNF253	O75346	499 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	OR2H2	O95918	312 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	KRAS	P01116	189 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	C3orf36	Q3SXR2	165 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	NMS	Q5H8A3	153 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	PCSK4	Q6UW60	755 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	NIT1	Q86X76	327 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	ZNF695	Q8IW36	515 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	SELENOH	Q8IZQ5	122 aa	Known RBP	12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	OR4F17	Q8NGA8	305 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	OR4F4	Q96R69	305 aa		12.76	□□□□□ -0.37
PNKP-204	ENST00000594661	SAA2-SAA4	A0A096LPE2	208 aa		12.76	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms