RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 PPP5D1E7EU14 171 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 C16orf97H3BN30 126 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 HMGB3O15347 200 aaKnown RBP6.1□□□□□ -1.43
ZNF540-206ENST00000589117 PAGE4O60829 102 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 PROP1O75360 226 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 CXorf1O96002 111 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 CXCL1P09341 107 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 CGB3P0DN86 165 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 CGB7P0DN87 165 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 BMP5P22003 454 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 HOXA4Q00056 320 aaPredicted RBP6.1□□□□□ -1.43
ZNF540-206ENST00000589117 LYG1Q8N1E2 194 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 PARLQ9H300 379 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 GAL3ST2Q9H3Q3 398 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 IDI2-AS1Q9NZ38 188 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 DOK5Q9P104 306 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 TCF19Q9Y242 345 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 FOXA2Q9Y261 457 aaPredicted RBP6.1□□□□□ -1.43
ZNF540-206ENST00000589117 TP53TG5Q9Y2B4 290 aa6.1□□□□□ -1.43
ZNF540-206ENST00000589117 TRAV38-1A0A0B4J264 116 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 FNDC10F2Z333 226 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 IGHV1-46P01743 117 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 TRGC2P03986 189 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 VDAC2P45880 294 aaPredicted RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 ZNF134P52741 427 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 LINC00205P59089 165 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 MEF2CQ06413 473 aaPredicted RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 CT45A1Q5HYN5 189 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 CST9LP1Q5W188 147 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 STUMQ69YW2 141 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 TGIF2LYQ8IUE0 185 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 CT45A3Q8NHU0 189 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 DDB2Q92466 427 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 LINC00574Q9H8X3 128 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 NGBQ9NPG2 151 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 ZNF257Q9Y2Q1 563 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HEATR1Q9H583 2144 aaKnown RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 SAA2-SAA4A0A096LPE2 208 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BKO60814 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 CLN5O75503 358 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BJP06899 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 FABP1P07148 127 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 SAA2P0DJI9 122 aaPredicted RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 CD99P14209 185 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BOP23527 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 NPY1RP25929 384 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BBP33778 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 SRP14P37108 136 aaKnown RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 GALR1P47211 349 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BDP58876 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 RHOBP62745 196 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BCP62807 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 RPL23P62829 140 aaKnown RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 FAM27E3Q08E93 113 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST2H2BEQ16778 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 MSMPQ1L6U9 139 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 C17orf58Q2M2W7 97 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 OR4A47Q6IF82 309 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 TREML4Q6UXN2 200 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 ZNF788Q6ZQV5 615 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 VKORC1L1Q8N0U8 176 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 RBMXL3Q8N7X1 1067 aaKnown RBP6.09□□□□□ -1.43
ZNF540-206ENST00000589117 DEFB108BQ8NET1 73 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 SLC24A4Q8NFF2 622 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BHQ93079 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BNQ99877 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 HIST1H2BMQ99879 126 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 OR51M1Q9H341 326 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 SRD5A3Q9H8P0 318 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 TMEM14BQ9NUH8 114 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 PITPNC1Q9UKF7 332 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 LINC00312Q9Y6C7 94 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 PXMP4Q9Y6I8 212 aa6.09□□□□□ -1.43
ZNF540-206ENST00000589117 PRSS29PA6NIE9 313 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 IGHV3-7P01780 117 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 FAM3BP58499 235 aaPredicted RBP6.08□□□□□ -1.44
ZNF540-206ENST00000589117 POU2AF1Q16633 256 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 NCMAPQ5T1S8 102 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 TEX36Q5VZQ5 186 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 ASCL5Q7RTU5 278 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 SLC16A13Q7RTY0 426 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 ABHD12Q8N2K0 398 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 PLEKHA3Q9HB20 300 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 RPUSD1Q9UJJ7 312 aaKnown RBP6.08□□□□□ -1.44
ZNF540-206ENST00000589117 CDC42EP3Q9UKI2 254 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 OR51B2Q9Y5P1 312 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 FRYQ5TBA9 3013 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 INTS1Q8N201 2190 aaKnown RBP6.08□□□□□ -1.44
ZNF540-206ENST00000589117 PRRC2CQ9Y520 2896 aaKnown RBP6.08□□□□□ -1.44
ZNF540-206ENST00000589117 CACNA1HO95180 2353 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 J3QR06 171 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 RRHO14718 337 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 YIF1AO95070 293 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 APOA2P02652 100 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 GYPAP02724 150 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 FOSL1P15407 271 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 NDUFB7P17568 137 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 B2MP61769 119 aa6.08□□□□□ -1.44
ZNF540-206ENST00000589117 SLC25A48Q6ZT89 311 aaKnown RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms