RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 UCP3P55916 312 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 SSBP1Q04837 148 aaKnown RBP8.42□□□□□ -1.06
CLIP3-203ENST00000586457 MEF2DQ14814 521 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 RPEL1Q2QD12 228 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 VAX1Q5SQQ9 334 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 C10orf55Q5SWW7 151 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 TBC1D26Q86UD7 250 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 LAX1Q8IWV1 398 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 PUSL1Q8N0Z8 303 aaKnown RBP8.42□□□□□ -1.06
CLIP3-203ENST00000586457 ARRDC1Q8N5I2 433 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 TMEM229BQ8NBD8 167 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 NECAP1Q8NC96 275 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 ADAD2Q8NCV1 583 aaKnown RBP8.42□□□□□ -1.06
CLIP3-203ENST00000586457 DLX4Q92988 240 aaPredicted RBP8.42□□□□□ -1.06
CLIP3-203ENST00000586457 ISOC1Q96CN7 298 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 ABHD1Q96SE0 405 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 TSC22D3Q99576 134 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 RSRP1Q9BUV0 290 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 SLC2A9Q9NRM0 540 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 TMEM140Q9NV12 185 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 THYN1Q9P016 225 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 COPZ2Q9P299 210 aa8.42□□□□□ -1.06
CLIP3-203ENST00000586457 MARCH11A6NNE9 402 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 H3BMQ9 156 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 UPK2O00526 184 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 OR2J3O76001 311 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 PRH1P02810 166 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 TRAPPC2P0DI81 140 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 TRAPPC2BP0DI82 140 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 G6PCP35575 357 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 BRWD1-AS2P59051 145 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 KRTAP10-11P60412 298 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 SSBP2P81877 361 aaPredicted RBP8.41□□□□□ -1.06
CLIP3-203ENST00000586457 EGFEM1PQ0D2K5 195 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 ASPHD1Q5U4P2 390 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 STEAP1BQ6NZ63 245 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 H2BFWTQ7Z2G1 175 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 CCDC71LQ8N9Z2 235 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 OR6Q1Q8NGQ2 317 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 OR4A16Q8NH70 328 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 TERB2Q8NHR7 220 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 DYNC2LI1Q8TCX1 351 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 ZNF486Q96H40 463 aaPredicted RBP8.41□□□□□ -1.06
CLIP3-203ENST00000586457 FBXL7Q9UJT9 491 aa8.41□□□□□ -1.06
CLIP3-203ENST00000586457 C14orf166Q9Y224 244 aaKnown RBP8.41□□□□□ -1.06
CLIP3-203ENST00000586457 NOTCH3Q9UM47 2321 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 NPIPB5A8MRT5 1133 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 ZNF735P0CB33 412 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 AKAIN1P0CW23 69 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 PSMB6P28072 239 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 PPP5CP53041 499 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 EXOSC2Q13868 293 aaKnown RBP8.4□□□□□ -1.06
CLIP3-203ENST00000586457 MRGPRG-AS1Q2M3A8 158 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 C15orf32Q32M92 178 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 THOC7Q6I9Y2 204 aaKnown RBP8.4□□□□□ -1.06
CLIP3-203ENST00000586457 ZNF343Q6P1L6 599 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 HSD17B13Q7Z5P4 300 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-203ENST00000586457 OR1L8Q8NGR8 309 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 RNASE11Q8TAA1 199 aaKnown RBP8.4□□□□□ -1.06
CLIP3-203ENST00000586457 EEF1AKMT3Q96AZ1 226 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 TMEM56Q96MV1 263 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 QTRT1Q9BXR0 403 aaKnown RBP8.4□□□□□ -1.06
CLIP3-203ENST00000586457 FXYD6Q9H0Q3 95 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 MIXL1Q9H2W2 232 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 AKIP1Q9NQ31 210 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 PEMTQ9UBM1 199 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 PRNDQ9UKY0 176 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 ZNF256Q9Y2P7 627 aaPredicted RBP8.4□□□□□ -1.06
CLIP3-203ENST00000586457 OR51B2Q9Y5P1 312 aa8.4□□□□□ -1.06
CLIP3-203ENST00000586457 WI2-2373I1.2A0A1W2PRP0 233 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 REG1AP05451 166 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 IL6RP08887 468 aaPredicted RBP8.39□□□□□ -1.07
CLIP3-203ENST00000586457 PIGPP57054 158 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 SYNJ2BPP57105 145 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 DEFA5Q01523 94 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 CD69Q07108 199 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 POU2AF1Q16633 256 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 TRIM16LQ309B1 348 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 PYDC2Q56P42 97 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 CXorf58Q96LI9 332 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 SCGB3A2Q96PL1 93 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 SRSF8Q9BRL6 282 aaKnown RBP8.39□□□□□ -1.07
CLIP3-203ENST00000586457 PDCD10Q9BUL8 212 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 FAM212BQ9NTI7 297 aaPredicted RBP8.39□□□□□ -1.07
CLIP3-203ENST00000586457 MCUBQ9NWR8 336 aa8.39□□□□□ -1.07
CLIP3-203ENST00000586457 TRAV3A0A0B4J244 114 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 TEX13DA0A0J9YY54 714 aaPredicted RBP8.38□□□□□ -1.07
CLIP3-203ENST00000586457 C3orf85A0A1B0GTC6 90 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 TEX50A0A1B0GTY4 177 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 TEX22C9J3V5 150 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 CTDSPLO15194 276 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 FGF2P09038 288 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 OR13C7P0DN81 318 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 AREGP15514 252 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 PI3P19957 117 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 TNFSF8P32971 234 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 FAUP35544 74 aaKnown RBP8.38□□□□□ -1.07
CLIP3-203ENST00000586457 INPP1P49441 399 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 AKR1C2P52895 323 aa8.38□□□□□ -1.07
CLIP3-203ENST00000586457 OR2B8PP59922 312 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms