RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 ANAPC10Q9UM13 185 aa9.51□□□□□ -0.89
SS18-225ENST00000585121 ZNF257Q9Y2Q1 563 aa9.51□□□□□ -0.89
SS18-225ENST00000585121 V9GYH0 126 aa9.51□□□□□ -0.89
SS18-225ENST00000585121 SORL1Q92673 2214 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 HMX3A6NHT5 357 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 FAM25AB3EWG3 89 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 FAM25CB3EWG5 89 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 FAM25GB3EWG6 89 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 PRH1P02810 166 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 GP9P14770 177 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 SPNP16150 400 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 HLA-GP17693 338 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 NAT1P18440 290 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 SYNJ2BPP57105 145 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 BRWD1-AS2P59051 145 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 TSPAN5P62079 268 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 EXOSC2Q13868 293 aaKnown RBP9.5□□□□□ -0.89
SS18-225ENST00000585121 DMBX1Q8NFW5 382 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 OR9G4Q8NGQ1 327 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 OR51H1Q8NH63 302 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 SLC2A9Q9NRM0 540 aa9.5□□□□□ -0.89
SS18-225ENST00000585121 TRBV9A0A0B4J1U6 114 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 NPIPB5A8MRT5 1133 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 TEX22C9J3V5 150 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 OR2J3O76001 311 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 ZNF735P0CB33 412 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 HLA-DMAP28067 261 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 GNRHRP30968 328 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 HRH1P35367 487 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 ERVK-16P61578 105 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 OR4A47Q6IF82 309 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 C11orf87Q6NUJ2 197 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 LPCAT3Q6P1A2 487 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 SNX29P2Q8IUI4 249 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 C15orf40Q8WUR7 153 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 MOB3AQ96BX8 217 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 PLEKHA2Q9HB19 425 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 COMMD9Q9P000 198 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 PEMTQ9UBM1 199 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 EXTL2Q9UBQ6 330 aa9.49□□□□□ -0.89
SS18-225ENST00000585121 H0Y980 276 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 UPK1BO75841 260 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 IL6RP08887 468 aaPredicted RBP9.48□□□□□ -0.89
SS18-225ENST00000585121 DEFA4P12838 97 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 HIST1H1BP16401 226 aaKnown RBP9.48□□□□□ -0.89
SS18-225ENST00000585121 RCVRNP35243 200 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 ZNF79Q15937 498 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 GPX8Q8TED1 209 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 COMMD5Q9GZQ3 224 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 SRRQ9GZT4 340 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 FBXL7Q9UJT9 491 aa9.48□□□□□ -0.89
SS18-225ENST00000585121 GPR31O00270 319 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 CYB5BO43169 146 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 PGLYRP1O75594 196 aaPredicted RBP9.47□□□□□ -0.89
SS18-225ENST00000585121 IGLV1-51P01701 117 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 TRBV12-3P01733 135 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 RLN1P04808 185 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 F2RP25116 425 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 PSMB6P28072 239 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 IL18Q14116 193 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 POU2AF1Q16633 256 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 C15orf32Q32M92 178 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 LYSMD2Q8IV50 215 aa9.47□□□□□ -0.89
SS18-225ENST00000585121 SDHCQ99643 169 aaPredicted RBP9.47□□□□□ -0.89
SS18-225ENST00000585121 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.46□□□□□ -0.89
SS18-225ENST00000585121 UPK2O00526 184 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 RBMXL2O75526 392 aaKnown RBP9.46□□□□□ -0.89
SS18-225ENST00000585121 S1PR2O95136 353 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 CRYGCP07315 174 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 FGF2P09038 288 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 PYDC2Q56P42 97 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 THOC7Q6I9Y2 204 aaKnown RBP9.46□□□□□ -0.89
SS18-225ENST00000585121 ASCL2Q99929 193 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 SRSF8Q9BRL6 282 aaKnown RBP9.46□□□□□ -0.89
SS18-225ENST00000585121 TMEM140Q9NV12 185 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 U3KQK5 164 aa9.46□□□□□ -0.89
SS18-225ENST00000585121 COL7A1Q02388 2944 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 E7EUB6 86 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 BMPR1BO00238 502 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 CTDSPLO15194 276 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 GGCTO75223 188 aaKnown RBP9.46□□□□□ -0.9
SS18-225ENST00000585121 IFNA6P05013 189 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 AREGP15514 252 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 RPA2P15927 270 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 CTRB1P17538 263 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 LPAR6P43657 344 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 IFITM3Q01628 133 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 CTRB2Q6GPI1 263 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 HAPLN4Q86UW8 402 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 EEF1AKMT3Q96AZ1 226 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 WWC2-AS2Q96NR7 200 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 QTRT1Q9BXR0 403 aaKnown RBP9.46□□□□□ -0.9
SS18-225ENST00000585121 FXYD6Q9H0Q3 95 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 SIGLEC8Q9NYZ4 499 aa9.46□□□□□ -0.9
SS18-225ENST00000585121 MARCH11A6NNE9 402 aa9.45□□□□□ -0.9
SS18-225ENST00000585121 SNAPC5O75971 98 aa9.45□□□□□ -0.9
SS18-225ENST00000585121 MYOD1P15172 320 aa9.45□□□□□ -0.9
SS18-225ENST00000585121 DEFA1P59665 94 aa9.45□□□□□ -0.9
SS18-225ENST00000585121 DEFA3P59666 94 aa9.45□□□□□ -0.9
SS18-225ENST00000585121 OR2B8PP59922 312 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms