RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 SP6Q3SY56 376 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 ABCA11PQ4W5N1 156 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 NCMAPQ5T1S8 102 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 RHBDD2Q6NTF9 364 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 WDR74Q6RFH5 385 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 Q6ZVH6 145 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 ANKRD37Q7Z713 158 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 TGIF2LXQ8IUE1 241 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SAXO1Q8IYX7 474 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 H1FOOQ8IZA3 346 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SELENOHQ8IZQ5 122 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 HIST3H2BBQ8N257 126 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 OR2G3Q8NGZ4 309 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 CLDND2Q8NHS1 167 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 PLPPR1Q8TBJ4 325 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 CD300LFQ8TDQ1 290 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 LMX1AQ8TE12 382 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 Q8WTZ3 238 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 HIST1H2BHQ93079 126 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SPTSSAQ969W0 71 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 NABP1Q96AH0 204 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 DNAJA3Q96EY1 480 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 TECTBQ96PL2 329 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SIGLEC12Q96PQ1 595 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 PFDN5Q99471 154 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 HIST1H2BNQ99877 126 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 HIST1H2BMQ99879 126 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 C2orf88Q9BSF0 95 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 CHRDL1Q9BU40 450 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SMIM3Q9BZL3 60 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 ACTR3CQ9C0K3 210 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 TMEM222Q9H0R3 208 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SH3BGRL3Q9H299 93 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 CXXC4Q9H2H0 198 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 ZNF286AQ9HBT8 521 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 SLC2A9Q9NRM0 540 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 LYRM2Q9NU23 88 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 AK3Q9UIJ7 227 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 DKKL1Q9UK85 242 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 PITPNC1Q9UKF7 332 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 RCL1Q9Y2P8 373 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 FBXO7Q9Y3I1 522 aa3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 PUS1Q9Y606 427 aaKnown RBP eCLIP3.04□□□□□ -1.92
SMCHD1-208ENST00000583344 TTC28Q96AY4 2481 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 LAMA3Q16787 3333 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 EYSQ5T1H1 3165 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 PRUNE2Q8WUY3 3088 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 BDP1A6H8Y1 2624 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 TRBV6-6A0A0A6YYG2 114 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 IGSF23A1L1A6 192 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 C5orf63A6NC05 138 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 NKX2-6A6NCS4 301 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 OR5H15A6NDH6 313 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 NKX6-3A6NJ46 265 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 OR5H1A6NKK0 313 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 A8MWP6 167 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 C9J4A7 227 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 M0R135 149 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 GEMIN2O14893 280 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 PPP1R2P9O14990 202 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SLC31A2O15432 143 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 RAMP1O60894 148 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 PDCD6O75340 191 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 CYB5R3P00387 301 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 GCGP01275 180 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 TRGC2P03986 189 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 PFN1P07737 140 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SOD3P08294 240 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 CST2P09228 141 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 TRGC1P0CF51 173 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 KLK2P20151 261 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SERPINA2P20848 420 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 FUT3P21217 361 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 VDAC1P21796 283 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 GABRR1P24046 479 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 GNRHRP30968 328 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 CD200P41217 278 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 MAGEA5P43359 124 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 NOVA1P51513 510 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 CARD18P57730 90 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 TAS2R60P59551 318 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 RAB4BP61018 213 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SERF2P84101 59 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 TGIF1Q15583 401 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 HAGHQ16775 308 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 MPV17LQ2QL34 196 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 Q3ZCU0 254 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 FAM106AQ4KMX7 169 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 AKIRIN2Q53H80 203 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 NMSQ5H8A3 153 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 ZNF562Q6V9R5 426 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SPNS3Q6ZMD2 512 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SLC25A26Q70HW3 274 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 DPPA2Q7Z7J5 298 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 TGIF2LYQ8IUE0 185 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 C20orf196Q8IYI0 205 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 OSR2Q8N2R0 312 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 FGFRL1Q8N441 504 aa3.03□□□□□ -1.92
SMCHD1-208ENST00000583344 SLC35G3Q8N808 338 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms