RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 S100GP29377 79 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 RPL5P46777 297 aaKnown RBP18.33■□□□□ 0.52
SHMT1-206ENST00000579558 C19orf35Q6ZS72 473 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 LAX1Q8IWV1 398 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 NECAP1Q8NC96 275 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 ABHD1Q96SE0 405 aa18.33■□□□□ 0.52
SHMT1-206ENST00000579558 CTDSP2O14595 271 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 NOL3O60936 208 aaKnown RBP18.32■□□□□ 0.52
SHMT1-206ENST00000579558 OR2J3O76001 311 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 LPAR6P43657 344 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 KLF5Q13887 457 aaPredicted RBP18.32■□□□□ 0.52
SHMT1-206ENST00000579558 RNASE10Q5GAN6 216 aaKnown RBP18.32■□□□□ 0.52
SHMT1-206ENST00000579558 OR6Q1Q8NGQ2 317 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 FCAMRQ8WWV6 532 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 RSRP1Q9BUV0 290 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 MTFP1Q9UDX5 166 aa18.32■□□□□ 0.52
SHMT1-206ENST00000579558 CGB1A6NKQ9 187 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 MARCH11A6NNE9 402 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 IFNA6P05013 189 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 PSMB6P28072 239 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 UCP3P55916 312 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 OR2B8PP59922 312 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 RPEL1Q2QD12 228 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 SLC38A6Q8IZM9 456 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 DYNC2LI1Q8TCX1 351 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 COMMD5Q9GZQ3 224 aa18.31■□□□□ 0.52
SHMT1-206ENST00000579558 CCDC59Q9P031 241 aaKnown RBP18.31■□□□□ 0.52
SHMT1-206ENST00000579558 DHFRP00374 187 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 CD3DP04234 171 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 REG1AP05451 166 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 CRYGCP07315 174 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 SYNJ2BPP57105 145 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 CD69Q07108 199 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 C15orf32Q32M92 178 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 ZNF585BQ52M93 769 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 B9D2Q9BPU9 175 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 FBXL7Q9UJT9 491 aa18.3■□□□□ 0.52
SHMT1-206ENST00000579558 LSM4Q9Y4Z0 139 aaKnown RBP18.3■□□□□ 0.52
SHMT1-206ENST00000579558 KRASP01116 189 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 FGF2P09038 288 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 SPNP16150 400 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 CTRB1P17538 263 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 TBPP20226 339 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 CTRB2Q6GPI1 263 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 TBC1D26Q86UD7 250 aa18.29■□□□□ 0.52
SHMT1-206ENST00000579558 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP18.28■□□□□ 0.52
SHMT1-206ENST00000579558 DEFA4P12838 97 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 PGAM2P15259 253 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 G6PCP35575 357 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 TATDN3Q17R31 274 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 ARRDC1Q8N5I2 433 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 OR9G4Q8NGQ1 327 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 FANCD2OSQ96PS1 177 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 SORL1Q92673 2214 aa18.28■□□□□ 0.52
SHMT1-206ENST00000579558 GABARAPH6UMI1 98 aa18.27■□□□□ 0.52
SHMT1-206ENST00000579558 BMPR1BO00238 502 aa18.27■□□□□ 0.52
SHMT1-206ENST00000579558 HIST1H1BP16401 226 aaKnown RBP18.27■□□□□ 0.52
SHMT1-206ENST00000579558 MRPS10P82664 201 aaKnown RBP18.27■□□□□ 0.52
SHMT1-206ENST00000579558 FAM209BQ5JX69 171 aa18.27■□□□□ 0.52
SHMT1-206ENST00000579558 HAPLN4Q86UW8 402 aa18.27■□□□□ 0.52
SHMT1-206ENST00000579558 TMEM229BQ8NBD8 167 aa18.27■□□□□ 0.52
SHMT1-206ENST00000579558 ISOC1Q96CN7 298 aa18.27■□□□□ 0.52
SHMT1-206ENST00000579558 SRSF8Q9BRL6 282 aaKnown RBP18.27■□□□□ 0.52
SHMT1-206ENST00000579558 QTRT1Q9BXR0 403 aaKnown RBP18.27■□□□□ 0.52
SHMT1-206ENST00000579558 FAM212BQ9NTI7 297 aaPredicted RBP18.27■□□□□ 0.52
SHMT1-206ENST00000579558 IGLC7A0M8Q6 106 aa18.26■□□□□ 0.51
SHMT1-206ENST00000579558 H3BMQ9 156 aa18.26■□□□□ 0.51
SHMT1-206ENST00000579558 NDUFB8O95169 186 aa18.26■□□□□ 0.51
SHMT1-206ENST00000579558 TAS2R19P59542 299 aa18.26■□□□□ 0.51
SHMT1-206ENST00000579558 LHFPL1Q86WI0 220 aa18.26■□□□□ 0.51
SHMT1-206ENST00000579558 DIRAS2Q96HU8 199 aa18.26■□□□□ 0.51
SHMT1-206ENST00000579558 SNAPC5O75971 98 aa18.25■□□□□ 0.51
SHMT1-206ENST00000579558 GP9P14770 177 aa18.25■□□□□ 0.51
SHMT1-206ENST00000579558 THOC7Q6I9Y2 204 aaKnown RBP18.25■□□□□ 0.51
SHMT1-206ENST00000579558 CADM3Q8N126 398 aa18.25■□□□□ 0.51
SHMT1-206ENST00000579558 OR4D10Q8NGI6 311 aa18.25■□□□□ 0.51
SHMT1-206ENST00000579558 OR1L8Q8NGR8 309 aa18.25■□□□□ 0.51
SHMT1-206ENST00000579558 C6orf62Q9GZU0 229 aaPredicted RBP18.25■□□□□ 0.51
SHMT1-206ENST00000579558 NSG2Q9Y328 171 aa18.25■□□□□ 0.51
SHMT1-206ENST00000579558 IGLV11-55A0A075B6I3 123 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 TEX50A0A1B0GTY4 177 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 RAB3DO95716 219 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 IGLV1-51P01701 117 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 IGHV3-23P01764 117 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 CD74P04233 296 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 TRAPPC2P0DI81 140 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 TRAPPC2BP0DI82 140 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 SSBP1Q04837 148 aaKnown RBP18.24■□□□□ 0.51
SHMT1-206ENST00000579558 IL18Q14116 193 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 KLK9Q2XQG4 91 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 STEAP1BQ6NZ63 245 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 IL34Q6ZMJ4 242 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 OR10W1Q8NGF6 305 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 ZNF486Q96H40 463 aaPredicted RBP18.24■□□□□ 0.51
SHMT1-206ENST00000579558 KLK9Q9UKQ9 250 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 S4R3C0 116 aa18.24■□□□□ 0.51
SHMT1-206ENST00000579558 PPP5D1E7EU14 171 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 PI3P19957 117 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 PPP5CP53041 499 aa18.23■□□□□ 0.51
SHMT1-206ENST00000579558 RND3P61587 244 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms