RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 MAP3K4Q9Y6R4 1608 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 XIRP1Q702N8 1843 aaKnown RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 ADGRB1O14514 1584 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ABCA8O94911 1581 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 FRMPD1Q5SYB0 1578 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 VWDEQ8N2E2 1590 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 NFASCO94856 1347 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 IGLV11-55A0A075B6I3 123 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 IGLV3-22A0A075B6J6 115 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 IGHV2OR16-5A0A0B4J2B6 119 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 LOC100130705A0A1B0GUX0 176 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 PLAC8L1A1L4L8 177 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 INMT-MINDY4F8WBC2 141 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 SMKR1H3BMG3 65 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ZNF207O43670 478 aaKnown RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 MPC2O95563 127 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 UCHL1P09936 223 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 OR4Q2P0C623 313 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 RAB5AP20339 215 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 PRTN3P24158 256 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 MYL9P24844 172 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 CNTFRP26992 372 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 S100A2P29034 98 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 TSPOP30536 169 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 G6PCP35575 357 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 GPR6P46095 362 aaPredicted RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 FABP6P51161 128 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ZNF136P52737 540 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 RPS25P62851 125 aaKnown RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 GNG5P63218 68 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 CEACAM16Q2WEN9 425 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 MESTQ5EB52 335 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ARL9Q6T311 187 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 LYPD2Q6UXB3 125 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 GOLT1AQ6ZVE7 132 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 OOSP2Q86WS3 158 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 PCP2Q8IVA1 136 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 OR8I2Q8N0Y5 310 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 YIPF7Q8N8F6 280 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ZNF615Q8N8J6 731 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 COX18Q8N8Q8 333 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 Q8N976 141 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ZNF555Q8NEP9 628 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 OR11H6Q8NGC7 330 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 OR52E2Q8NGJ4 325 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 OR51Q1Q8NH59 317 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ZNF431Q8TF32 576 aaPredicted RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 PLEKHB2Q96CS7 222 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 DYNLL2Q96FJ2 89 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 PGLYRP3Q96LB9 341 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 MRPL57Q9BQC6 102 aaKnown RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 RTBDNQ9BSG5 229 aaPredicted RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 RNASE7Q9H1E1 156 aaKnown RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 TMEM133Q9H2Q1 129 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 FBXL12Q9NXK8 326 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 BOKQ9UMX3 212 aaPredicted RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 TPRKBQ9Y3C4 175 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 PCYT1BQ9Y5K3 369 aaPredicted RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 XRN1Q8IZH2 1706 aaKnown RBP2.75□□□□□ -1.97
NUP88-208ENST00000574087 ADAMTSL3P82987 1691 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 RIC1Q4ADV7 1423 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 DEPDC5O75140 1603 aa2.75□□□□□ -1.97
NUP88-208ENST00000574087 ARHGAP5Q13017 1502 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SIGLEC1Q9BZZ2 1709 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 A0A0U1RQV1 116 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 FAM236DA0A1B0GTK5 79 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SPRR5A0A1B0GTR4 108 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 FAM240AA0A1B0GVK7 77 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 TCRBV3S1A0A5B6 114 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 A6NDN8 102 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 EEF1E1-BLOC1S5C9J1V9 151 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 MYL12BO14950 172 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 EEF1E1O43324 174 aaKnown RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 CD5LO43866 347 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 YIF1AO95070 293 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 ZNF682O95780 498 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SERPINE1P05121 402 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 REG1AP05451 166 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SCTP09683 121 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 IGHV3-43DP0DP04 118 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 FAM236CP0DP71 79 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 MIPP30301 263 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 GABRA3P34903 492 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 NUDT2P50583 147 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 POLR2HP52434 150 aaKnown RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 EMP1P54849 157 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 TAS2R20P59543 309 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SLC25A11Q02978 314 aaKnown RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 MEF2CQ06413 473 aaPredicted RBP2.74□□□□□ -1.97
NUP88-208ENST00000574087 PMAIP1Q13794 54 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 ZNF726P1Q15940 193 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 UBE2SQ16763 222 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 FAM74A1Q5RGS3 127 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 GLYATL3Q5SZD4 288 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SPATA31B1PQ5VZV4 182 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 XAF1Q6GPH4 301 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 SLC35E3Q7Z769 313 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 ZNF664Q8N3J9 261 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 GPR26Q8NDV2 337 aa2.74□□□□□ -1.97
NUP88-208ENST00000574087 OR4S1Q8NGB4 309 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms