RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IL18R1Q13478 541 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR8B8Q15620 311 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 ZNF585BQ52M93 769 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 TMEM255AQ5JRV8 349 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 FAM27D1Q5T7N8 215 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 BCL2L15Q5TBC7 163 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 UBE2UQ5VVX9 321 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 CBLN2Q8IUK8 224 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR4M2Q8NGB6 313 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR8B3Q8NGG8 313 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR2T6Q8NHC8 308 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 ZNF420Q8TAQ5 688 aaPredicted RBP4.78□□□□□ -1.64
VPS53-212ENST00000572259 HAVCR2Q8TDQ0 301 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR8B2Q96RD0 313 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 AMELYQ99218 206 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 RTL8AQ9BWD3 113 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 PBOV1Q9GZY1 135 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 PSG11Q9UQ72 335 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 OR51B2Q9Y5P1 312 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 R4GMQ9 66 aa4.78□□□□□ -1.64
VPS53-212ENST00000572259 DAPL1A0PJW8 107 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 DHRS7CA6NNS2 312 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 GATBO75879 557 aaKnown RBP4.77□□□□□ -1.65
VPS53-212ENST00000572259 DHRS3O75911 302 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 DHFRP00374 187 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 CYB5R3P00387 301 aaPredicted RBP4.77□□□□□ -1.65
VPS53-212ENST00000572259 HPRT1P00492 218 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 SNRPCP09234 159 aaKnown RBP4.77□□□□□ -1.65
VPS53-212ENST00000572259 HIST1H1EP10412 219 aaKnown RBP4.77□□□□□ -1.65
VPS53-212ENST00000572259 IL2RGP31785 369 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 SUB1P53999 127 aaKnown RBP eCLIP4.77□□□□□ -1.65
VPS53-212ENST00000572259 DLX6P56179 175 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 GNB2P62879 340 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 GNG3P63215 75 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 ZNF726P1Q15940 193 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 TMEM244Q5VVB8 128 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OLFML2AQ68BL7 652 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 ZNF57Q68EA5 555 aaPredicted RBP4.77□□□□□ -1.65
VPS53-212ENST00000572259 LYG2Q86SG7 212 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 LGI3Q8N145 548 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 PNKDQ8N490 385 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 ACBD7Q8N6N7 88 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 PACRGLQ8N7B6 248 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR1M1Q8NGA1 313 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR51D1Q8NGF3 324 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR8B12Q8NGG6 310 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR5A2Q8NGI9 324 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 C11orf45Q8TAV5 145 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR51E1Q8TCB6 317 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 TMEM56Q96MV1 263 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 TBX5Q99593 518 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 RASL11BQ9BPW5 248 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 C1QTNF4Q9BXJ3 329 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 TLNRD1Q9H1K6 362 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 GPR84Q9NQS5 396 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR5V1Q9UGF6 321 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 NUFIP1Q9UHK0 495 aaKnown RBP4.77□□□□□ -1.65
VPS53-212ENST00000572259 OR52A1Q9UKL2 312 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 SLC7A11Q9UPY5 501 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 NF1P21359 2839 aa4.77□□□□□ -1.65
VPS53-212ENST00000572259 IGHV3-64DA0A0J9YX35 117 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 TINCRA0A1B0GVN0 87 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 ZNF850A8MQ14 1090 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 CEACAM18A8MTB9 384 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 COL6A5A8TX70 2615 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 M0R129 80 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 ENTPD6O75354 484 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 NRASP01111 189 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 TSHBP01222 138 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 TYMSP04818 313 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 HTR1AP08908 422 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 MUC1P15941 1255 aaPredicted RBP4.76□□□□□ -1.65
VPS53-212ENST00000572259 OR12D2P58182 307 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 RPL18AQ02543 176 aaKnown RBP4.76□□□□□ -1.65
VPS53-212ENST00000572259 PRDX4Q13162 271 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 MPPED2Q15777 294 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 LRRC36Q1X8D7 754 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 CEACAM21Q3KPI0 293 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 ZNF404Q494X3 552 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 SPRNQ5BIV9 151 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 ZNF684Q5T5D7 378 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 SLC36A1Q7Z2H8 476 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 DEFB108BQ8NET1 73 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 OR10Z1Q8NGY1 313 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 RHOXF1Q8NHV9 184 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 CASTOR1Q8WTX7 329 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 CYGBQ8WWM9 190 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 C12orf43Q96C57 262 aaKnown RBP4.76□□□□□ -1.65
VPS53-212ENST00000572259 TMEM208Q9BTX3 173 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 TTTY10Q9BZA0 68 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 C12orf4Q9NQ89 552 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 FAM206AQ9NX38 181 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 THYN1Q9P016 225 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 MLXQ9UH92 298 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 SMPXQ9UHP9 88 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 GNG8Q9UK08 70 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 ERGIC3Q9Y282 383 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 HSPE1-MOB4S4R3N1 261 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 KIAA2026Q5HYC2 2103 aa4.76□□□□□ -1.65
VPS53-212ENST00000572259 MXRA5Q9NR99 2828 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms