RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RNF167Q9H6Y7 350 aa8.23□□□□□ -1.09
VPS53-207ENST00000570510 ANAPC10Q9UM13 185 aa8.23□□□□□ -1.09
VPS53-207ENST00000570510 KIR2DL5BA0A0G2JN68 375 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 KIR2DL5BA0A0G2JPC4 375 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 BET1O15155 118 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 CREBL2O60519 120 aaPredicted RBP8.22□□□□□ -1.09
VPS53-207ENST00000570510 PROP1O75360 226 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 OR2C1O95371 312 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 IGKV1-16P04430 117 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 FGF2P09038 288 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 OR9G9P0C7N8 305 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 RPL35AP18077 110 aaKnown RBP8.22□□□□□ -1.09
VPS53-207ENST00000570510 NAT1P18440 290 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 TAS2R46P59540 309 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 FAM106AQ4KMX7 169 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 IGSF11Q5DX21 431 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 TMEM69Q5SWH9 247 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 ZNF66Q6ZN08 573 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 KIR2DL5AQ8N109 375 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 CADM3Q8N126 398 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 UXS1Q8NBZ7 420 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 BEST4Q8NFU0 473 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 OR5H6Q8NGV6 325 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 KIR2DL5BQ8NHK3 375 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 OSR1Q8TAX0 266 aaPredicted RBP8.22□□□□□ -1.09
VPS53-207ENST00000570510 GIMAP1Q8WWP7 306 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 CACNG8Q8WXS5 425 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 ABHD14BQ96IU4 210 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 RARRES2Q99969 163 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 C6orf62Q9GZU0 229 aaPredicted RBP8.22□□□□□ -1.09
VPS53-207ENST00000570510 AKIP1Q9NQ31 210 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 PRELID3BQ9Y3B1 194 aa8.22□□□□□ -1.09
VPS53-207ENST00000570510 RBM7Q9Y580 266 aaKnown RBP8.22□□□□□ -1.09
VPS53-207ENST00000570510 PKHD1P08F94 4074 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 A0A075B6Q4 140 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.21□□□□□ -1.1
VPS53-207ENST00000570510 PPP5D1E7EU14 171 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 SSX5O60225 188 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 HLA-AP01891 365 aaKnown RBP8.21□□□□□ -1.1
VPS53-207ENST00000570510 EDN2P20800 178 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 PRSS3P35030 304 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 MRPS10P82664 201 aaKnown RBP8.21□□□□□ -1.1
VPS53-207ENST00000570510 SSBP1Q04837 148 aaKnown RBP8.21□□□□□ -1.1
VPS53-207ENST00000570510 PJVKQ0ZLH3 352 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 DHRS11Q6UWP2 260 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 C5orf24Q7Z6I8 188 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 OR2C3Q8N628 320 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 MAPKAPK5-AS1Q8N8E1 139 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 SAMD12Q8N8I0 201 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 OR5AP2Q8NGF4 316 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 CD300LFQ8TDQ1 290 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 OR2D2Q9H210 308 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 SDHAF2Q9NX18 166 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 UBQLN2Q9UHD9 624 aa8.21□□□□□ -1.1
VPS53-207ENST00000570510 ZNF230Q9UIE0 474 aaPredicted RBP8.21□□□□□ -1.1
VPS53-207ENST00000570510 MRPS7Q9Y2R9 242 aaKnown RBP8.21□□□□□ -1.1
VPS53-207ENST00000570510 SMIM30A4D0T7 59 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 C11orf94C9JXX5 98 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 M0R2N4 97 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 LGALS9O00182 355 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 RBFOX2O43251 390 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS53-207ENST00000570510 PRH1P02810 166 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 TBPP20226 339 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 DUTP33316 252 aaKnown RBP8.2□□□□□ -1.1
VPS53-207ENST00000570510 MFAP2P55001 183 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 VBP1P61758 197 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 NCS1P62166 190 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 OR4A47Q6IF82 309 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 BTNL8Q6UX41 500 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 ZNF383Q8NA42 475 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 TEX45Q8NA69 505 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 NECAP1Q8NC96 275 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 VSTM2AQ8TAG5 236 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 NUDCD2Q8WVJ2 157 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 FAM212BQ9NTI7 297 aaPredicted RBP8.2□□□□□ -1.1
VPS53-207ENST00000570510 SLC35D1Q9NTN3 355 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 MLXQ9UH92 298 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 VPS13DQ5THJ4 4388 aa8.2□□□□□ -1.1
VPS53-207ENST00000570510 TRAV25A0A0B4J276 109 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 ZNF701M0R085 212 aaPredicted RBP8.19□□□□□ -1.1
VPS53-207ENST00000570510 M0R1X1 148 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 ACTL6BO94805 426 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 TAS2R20P59543 309 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 LSM3P62310 102 aaKnown RBP8.19□□□□□ -1.1
VPS53-207ENST00000570510 CDK10Q15131 360 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 TNXAQ16473 311 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 C15orf32Q32M92 178 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 LPCAT3Q6P1A2 487 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 GPHB5Q86YW7 130 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 GPX8Q8TED1 209 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 HARBI1Q96MB7 349 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 IFT46Q9NQC8 304 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 CCDC59Q9P031 241 aaKnown RBP8.19□□□□□ -1.1
VPS53-207ENST00000570510 APLNQ9ULZ1 77 aa8.19□□□□□ -1.1
VPS53-207ENST00000570510 RBMX2Q9Y388 322 aaKnown RBP8.19□□□□□ -1.1
VPS53-207ENST00000570510 IGKV1D-8A0A087WSZ0 117 aa8.18□□□□□ -1.1
VPS53-207ENST00000570510 SHOXO15266 292 aa8.18□□□□□ -1.1
VPS53-207ENST00000570510 NOL3O60936 208 aaKnown RBP8.18□□□□□ -1.1
VPS53-207ENST00000570510 RBMXL2O75526 392 aaKnown RBP8.18□□□□□ -1.1
VPS53-207ENST00000570510 FCGR2BP31994 310 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms