RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CXXC4Q9H2H0 198 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 ELOVL5Q9NYP7 299 aa12.06□□□□□ -0.48
VPS35-210ENST00000568784 MLNRO43193 412 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 CDKN1AP38936 164 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 TMEM183BQ1AE95 376 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 RPEL1Q2QD12 228 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 STPG3Q8N7X2 389 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 PPP1R35Q8TAP8 253 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 RND1Q92730 232 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 SSBP3Q9BWW4 388 aaPredicted RBP12.05□□□□□ -0.48
VPS35-210ENST00000568784 PPIAL4AQ9Y536 164 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 TRBV20OR9-2A0A075B6H5 130 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 GCHFRP30047 84 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 ZNF83P51522 516 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 MMD2Q8IY49 270 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 YTHDF2Q9Y5A9 579 aaKnown RBP12.05□□□□□ -0.48
VPS35-210ENST00000568784 IL6RP08887 468 aaPredicted RBP12.05□□□□□ -0.48
VPS35-210ENST00000568784 IGFBP2P18065 325 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 RNFT1Q5M7Z0 435 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 FAM19A2Q8N3H0 131 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 WIPI2Q9Y4P8 454 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 COL6A3P12111 3177 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 PLXNB1O43157 2135 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 CACNA1BQ00975 2339 aa12.05□□□□□ -0.48
VPS35-210ENST00000568784 HELTA6NFD8 242 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 SP5Q6BEB4 398 aaPredicted RBP12.04□□□□□ -0.48
VPS35-210ENST00000568784 TEPPQ6URK8 271 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 MOB3BQ86TA1 216 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 TMEM106BQ9NUM4 274 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 SPRR3Q9UBC9 169 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 SPTBN1Q01082 2364 aaKnown RBP12.04□□□□□ -0.48
VPS35-210ENST00000568784 CA1P00915 261 aaPredicted RBP12.04□□□□□ -0.48
VPS35-210ENST00000568784 RPLP1P05386 114 aaKnown RBP12.04□□□□□ -0.48
VPS35-210ENST00000568784 IRF2P14316 349 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 TNFSF10P50591 281 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 VWA1Q6PCB0 445 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 MIR17HGQ75NE6 70 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 MOGAT3Q86VF5 341 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 FER1L6-AS2Q96M78 137 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 MGST2Q99735 147 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 WNT10AQ9GZT5 417 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 NPVFQ9HCQ7 196 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 DIRC3C9JPN6 131 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 NPIPB11E5RHQ5 1161 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 KRTCAP3Q53RY4 240 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 SLC35E4Q6ICL7 350 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 WDR82Q6UXN9 313 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 GGTLC1Q9BX51 225 aa12.04□□□□□ -0.48
VPS35-210ENST00000568784 H0Y8G0 127 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 CLCF1Q9UBD9 225 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 GOLT1BQ9Y3E0 138 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 BRWD1-AS2P59051 145 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 HCFC1P51610 2035 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 CAMPP49913 170 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 CENPWQ5EE01 88 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 SLC24A4Q8NFF2 622 aa12.03□□□□□ -0.48
VPS35-210ENST00000568784 MRPS18CQ9Y3D5 142 aaKnown RBP12.03□□□□□ -0.48
VPS35-210ENST00000568784 PLAUP00749 431 aa12.02□□□□□ -0.48
VPS35-210ENST00000568784 DUTP33316 252 aaKnown RBP12.02□□□□□ -0.48
VPS35-210ENST00000568784 ERVK11-1P61568 191 aa12.02□□□□□ -0.48
VPS35-210ENST00000568784 TMEM178AQ8NBL3 297 aa12.02□□□□□ -0.48
VPS35-210ENST00000568784 PMS2P5A8MQ11 134 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 M0R1B8 84 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 ACSF3Q4G176 576 aaPredicted RBP12.02□□□□□ -0.49
VPS35-210ENST00000568784 C1orf194Q5T5A4 169 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 BEND2Q8NDZ0 799 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 DMDP11532 3685 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 ABCA4P78363 2273 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 CA2P00918 260 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 RANP62826 216 aaKnown RBP12.02□□□□□ -0.49
VPS35-210ENST00000568784 Q6ZWC4 215 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 BORCS7Q96B45 105 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 STARD4Q96DR4 205 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 SRIP30626 198 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 EFNB3Q15768 340 aa12.02□□□□□ -0.49
VPS35-210ENST00000568784 ZNF331Q9NQX6 463 aaPredicted RBP12.02□□□□□ -0.49
VPS35-210ENST00000568784 KIAA1549Q9HCM3 1950 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 Q6ZN92 141 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 TMEM210A6NLX4 147 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 TOX4O94842 621 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 CECR9P0C854 216 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 APELAP0DMC3 54 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 REG1BP48304 166 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 MRPS11P82912 194 aaKnown RBP12.01□□□□□ -0.49
VPS35-210ENST00000568784 GABRA6Q16445 453 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 MLANAQ16655 118 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 C1orf210Q8IVY1 113 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 SLC35D1Q9NTN3 355 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 TCF21O43680 179 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 WISP2O76076 250 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 ADH4P08319 380 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 PRB4P10163 310 aaPredicted RBP12.01□□□□□ -0.49
VPS35-210ENST00000568784 COA6Q5JTJ3 125 aaKnown RBP12.01□□□□□ -0.49
VPS35-210ENST00000568784 DNLZQ5SXM8 178 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 CD177Q8N6Q3 437 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 IL36BQ9NZH7 164 aa12.01□□□□□ -0.49
VPS35-210ENST00000568784 TBL2Q9Y4P3 447 aaKnown RBP12.01□□□□□ -0.49
VPS35-210ENST00000568784 PIEZO2Q9H5I5 2752 aa12□□□□□ -0.49
VPS35-210ENST00000568784 OR5G3P0C626 314 aa12□□□□□ -0.49
VPS35-210ENST00000568784 STAG3L2P0CL84 134 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms