RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 ZNF735P0CB33 412 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 PGAM2P15259 253 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 LPAR6P43657 344 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 DCTN2Q13561 401 aaKnown RBP10.34□□□□□ -0.75
CLK3-216ENST00000564468 MEF2DQ14814 521 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 C10orf55Q5SWW7 151 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 THOC7Q6I9Y2 204 aaKnown RBP10.34□□□□□ -0.75
CLK3-216ENST00000564468 ZNF429Q86V71 674 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 MCFD2Q8NI22 146 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 ZFAND1Q8TCF1 268 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 SMIM4Q8WVI0 70 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 SRSF8Q9BRL6 282 aaKnown RBP10.34□□□□□ -0.75
CLK3-216ENST00000564468 SLIRPQ9GZT3 109 aaKnown RBP10.34□□□□□ -0.75
CLK3-216ENST00000564468 TMEM140Q9NV12 185 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 RSL24D1Q9UHA3 163 aaKnown RBP10.34□□□□□ -0.75
CLK3-216ENST00000564468 CEPT1Q9Y6K0 416 aa10.34□□□□□ -0.75
CLK3-216ENST00000564468 TRBV9A0A0B4J1U6 114 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 MARCH11A6NNE9 402 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 TEX22C9J3V5 150 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 CYB5BO43169 146 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 SNAPC5O75971 98 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 CD74P04233 296 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 IL6RP08887 468 aaPredicted RBP10.33□□□□□ -0.76
CLK3-216ENST00000564468 HIST1H1BP16401 226 aaKnown RBP10.33□□□□□ -0.76
CLK3-216ENST00000564468 ECI1P42126 302 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 SLURP1P55000 103 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 KRTAP10-11P60412 298 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 RHOGP84095 191 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 ATP5G2Q06055 141 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 TATDN3Q17R31 274 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 STEAP1BQ6NZ63 245 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 ZNF343Q6P1L6 599 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 TBC1D26Q86UD7 250 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 LHFPL1Q86WI0 220 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 NECAP1Q8NC96 275 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 TERB2Q8NHR7 220 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 DLX4Q92988 240 aaPredicted RBP10.33□□□□□ -0.76
CLK3-216ENST00000564468 TSC22D3Q99576 134 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 ELOVL1Q9BW60 279 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 FKBP11Q9NYL4 201 aa10.33□□□□□ -0.76
CLK3-216ENST00000564468 PEF1Q9UBV8 284 aaKnown RBP10.33□□□□□ -0.76
CLK3-216ENST00000564468 ANKRD34BA5PLL1 514 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 FABP12A6NFH5 140 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 HMX3A6NHT5 357 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 ZNF701M0R085 212 aaPredicted RBP10.32□□□□□ -0.76
CLK3-216ENST00000564468 KRASP01116 189 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 CRYGCP07315 174 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 DEFA4P12838 97 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 RPA2P15927 270 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 PTBP1P26599 531 aaKnown RBP eCLIP10.32□□□□□ -0.76
CLK3-216ENST00000564468 PSMB6P28072 239 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 RND3P61587 244 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 ZNF585BQ52M93 769 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 HSD17B13Q7Z5P4 300 aaPredicted RBP10.32□□□□□ -0.76
CLK3-216ENST00000564468 CCDC71LQ8N9Z2 235 aa10.32□□□□□ -0.76
CLK3-216ENST00000564468 NXF2Q9GZY0 626 aaKnown RBP10.32□□□□□ -0.76
CLK3-216ENST00000564468 KMT2CQ8NEZ4 4911 aaKnown RBP10.32□□□□□ -0.76
CLK3-216ENST00000564468 DISC1C4P0D8 188 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 GSTZ1O43708 216 aaPredicted RBP10.31□□□□□ -0.76
CLK3-216ENST00000564468 ATG12O94817 140 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 SERPINE2P07093 398 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 AKAIN1P0CW23 69 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 CTRB1P17538 263 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 TNFSF8P32971 234 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 S100A5P33763 92 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 OR2B8PP59922 312 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 SCGB2B2Q4G0G5 96 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 CTRB2Q6GPI1 263 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 ACSM6Q6P461 480 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 OR1L8Q8NGR8 309 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 OR4C12Q96R67 309 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 QTRT1Q9BXR0 403 aaKnown RBP10.31□□□□□ -0.76
CLK3-216ENST00000564468 AKIP1Q9NQ31 210 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 THYN1Q9P016 225 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 COPZ2Q9P299 210 aa10.31□□□□□ -0.76
CLK3-216ENST00000564468 TENM3Q9P273 2699 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 DNAH3Q8TD57 4116 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 TRAV3A0A0B4J244 114 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 E7EUB6 86 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 K7EIL1 84 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 SAP30O75446 220 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 B3GALNT1O75752 331 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 OR2J3O76001 311 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 PRH1P02810 166 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 TRAPPC2P0DI81 140 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 TRAPPC2BP0DI82 140 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 G6PCP35575 357 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 PIGPP57054 158 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 ZNF45Q02386 682 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 EXOSC2Q13868 293 aaKnown RBP10.3□□□□□ -0.76
CLK3-216ENST00000564468 RPEL1Q2QD12 228 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 DEFB121Q5J5C9 76 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 OR6Q1Q8NGQ2 317 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 FBXL7Q9UJT9 491 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 PRNDQ9UKY0 176 aa10.3□□□□□ -0.76
CLK3-216ENST00000564468 TEX50A0A1B0GTY4 177 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 WI2-2373I1.2A0A1W2PRP0 233 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 H0Y980 276 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 AREGP15514 252 aa10.29□□□□□ -0.76
CLK3-216ENST00000564468 PPP5CP53041 499 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms