RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 GZMMP51124 257 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 DIO3P55073 304 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 CLDN17P56750 224 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 C1QTNF8P60827 252 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TNFAIP6P98066 277 aaPredicted RBP2.72□□□□□ -1.97
VPS35-203ENST00000562420 SLC25A11Q02978 314 aaKnown RBP2.72□□□□□ -1.97
VPS35-203ENST00000562420 TGFBR3Q03167 851 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ATP5G2Q06055 141 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 RIGQ13278 110 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 BATFQ16520 125 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 FAM106AQ4KMX7 169 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR10J3Q5JRS4 329 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF506Q5JVG8 444 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ACTL10Q5JWF8 245 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 VAX1Q5SQQ9 334 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF678Q5SXM1 525 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ATP1A1-AS1Q5TC04 95 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ARL9Q6T311 187 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 STAC2Q6ZMT1 411 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TMEM179BQ7Z7N9 219 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 SLC25A42Q86VD7 318 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF101Q8IZC7 436 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 Q8N377 158 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TEX29Q8N6K0 151 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 LRTM2Q8N967 370 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZIC4Q8N9L1 334 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 TMEM229BQ8NBD8 167 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR10G2Q8NGC3 310 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR52I1Q8NGK6 324 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR4C16Q8NGL9 310 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR4K13Q8NH42 304 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR1F12Q8NHA8 337 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 JOSD2Q8TAC2 188 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR51E1Q8TCB6 317 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 GPR148Q8TDV2 347 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 NDRG1Q92597 394 aaKnown RBP2.72□□□□□ -1.97
VPS35-203ENST00000562420 BORCS7Q96B45 105 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 MCHR1Q99705 422 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF670Q9BS34 389 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 GPR174Q9BXC1 333 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 EBPLQ9BY08 206 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 CHRNA10Q9GZZ6 450 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 SH3BGRL3Q9H299 93 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 RDH14Q9HBH5 336 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 NPVFQ9HCQ7 196 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 OR1A1Q9P1Q5 309 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 LHX3Q9UBR4 397 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 LAMTOR3Q9UHA4 124 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 PRO0628Q9UI54 55 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 DNAJC15Q9Y5T4 150 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 SOX21Q9Y651 276 aaPredicted RBP2.72□□□□□ -1.97
VPS35-203ENST00000562420 ZNF646O15015 1829 aaPredicted RBP2.72□□□□□ -1.97
VPS35-203ENST00000562420 SCN7AQ01118 1682 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 LAMB2P55268 1798 aa2.72□□□□□ -1.97
VPS35-203ENST00000562420 COL1A1P02452 1464 aaPredicted RBP2.71□□□□□ -1.97
VPS35-203ENST00000562420 COL5A3P25940 1745 aaPredicted RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 ITGB4P16144 1822 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ECM29Q5VYK3 1845 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 IGHV4-30-2A0A087WSY4 118 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 A0A0G2JLM5 398 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 DPRXA6NFQ7 191 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ZNF860A6NHJ4 632 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 A8MT66 165 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 F5H768 121 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CCL24O00175 119 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 AGPAT2O15120 278 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 STK17BO94768 372 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 NXPH4O95158 308 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 NCR2O95944 276 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 HRASP01112 189 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 KRASP01116 189 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 EIF4EP06730 217 aaKnown RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 ZNF728P0DKX0 622 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ZNF17P17021 662 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CSRP1P21291 193 aaKnown RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 LPAR6P43657 344 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR1E2P47887 323 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 ZFP36L2P47974 494 aaKnown RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 DSCR10P59022 87 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 HSPE1P61604 102 aaKnown RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 RPL8P62917 257 aaKnown RBP2.71□□□□□ -1.98
VPS35-203ENST00000562420 PAX8Q06710 450 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 GGTLC2Q14390 218 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 KIAA0040Q15053 153 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR1Q1Q15612 314 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 OR8B8Q15620 311 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 MSMO1Q15800 293 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 HLA-DRB5Q30154 266 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 SLC25A35Q3KQZ1 300 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 LINC00303Q3SY05 128 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 SPATA45Q537H7 98 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 TP53I3Q53FA7 332 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 PAGE3Q5JUK9 113 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 LY6G6FQ5SQ64 297 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 GLYATL3Q5SZD4 288 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CPTPQ5TA50 214 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 AADACL3Q5VUY0 350 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 CDC42EP5Q6NZY7 148 aa2.71□□□□□ -1.98
VPS35-203ENST00000562420 AMTNQ6UX39 209 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms