RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CD24P25063 80 aa17.11■□□□□ 0.33
CLN3-209ENST00000561689 ARL16Q0P5N6 197 aa17.11■□□□□ 0.33
CLN3-209ENST00000561689 VSTM2AQ8TAG5 236 aa17.11■□□□□ 0.33
CLN3-209ENST00000561689 TPSG1Q9NRR2 321 aa17.11■□□□□ 0.33
CLN3-209ENST00000561689 CSMD1Q96PZ7 3565 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 A0A096LNT2 108 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 HOXA1P49639 335 aaPredicted RBP17.1■□□□□ 0.33
CLN3-209ENST00000561689 VMA21Q3ZAQ7 101 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 MINOS1Q5TGZ0 78 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 TMEM14EPQ6UXP3 125 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 HAPLN4Q86UW8 402 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 MAPK1IP1LQ8NDC0 245 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 TMEM167AQ8TBQ9 72 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 TMED6Q8WW62 240 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 CFHR4Q92496 578 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 HEYLQ9NQ87 328 aaPredicted RBP17.1■□□□□ 0.33
CLN3-209ENST00000561689 MED9Q9NWA0 146 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 STRAPQ9Y3F4 350 aaKnown RBP17.1■□□□□ 0.33
CLN3-209ENST00000561689 MINOS1-NBL1R4GNA1 71 aa17.1■□□□□ 0.33
CLN3-209ENST00000561689 VENTXO95231 258 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 VDAC2P45880 294 aaPredicted RBP17.09■□□□□ 0.33
CLN3-209ENST00000561689 RPL8P62917 257 aaKnown RBP17.09■□□□□ 0.33
CLN3-209ENST00000561689 Q5PR19 223 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 LRRC75A-AS1Q8N1F1 130 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 UBAC2Q8NBM4 344 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 OR1S2Q8NGQ3 325 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 PHYHIPLQ96FC7 376 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 CACFD1Q9UGQ2 172 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 BORCS7-ASMTA0A0B4J1R7 106 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 CENPVL3A0A0U1RRI6 287 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 TEX50A0A1B0GTY4 177 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 B4DSR2 109 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 PJVKQ0ZLH3 352 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 HNF4GQ14541 408 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 OR8G2PQ6IF36 304 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 CCDC28AQ8IWP9 274 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 OR4A5Q8NH83 315 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 CLCC1Q96S66 551 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 SLC25A32Q9H2D1 315 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 HIPK2Q9H2X6 1198 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 ZNF430Q9H8G1 570 aaPredicted RBP17.09■□□□□ 0.33
CLN3-209ENST00000561689 ZNF257Q9Y2Q1 563 aa17.09■□□□□ 0.33
CLN3-209ENST00000561689 IGHV3OR16-10A0A075B7F0 116 aa17.08■□□□□ 0.33
CLN3-209ENST00000561689 FGF2P09038 288 aa17.08■□□□□ 0.33
CLN3-209ENST00000561689 SAA4P35542 130 aa17.08■□□□□ 0.33
CLN3-209ENST00000561689 EIF5AP63241 154 aaKnown RBP17.08■□□□□ 0.33
CLN3-209ENST00000561689 PSG5Q15238 335 aa17.08■□□□□ 0.33
CLN3-209ENST00000561689 FKBP11Q9NYL4 201 aa17.08■□□□□ 0.33
CLN3-209ENST00000561689 RNF223E7ERA6 249 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 FBXO24O75426 580 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 IGKV1D-33P01593 117 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 IGKV1-33P01594 117 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 CD1BP29016 333 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 CCDC144NLQ6NUI1 221 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 PIP4P2Q8N4L2 257 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 AJUBAQ96IF1 538 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 COMMD5Q9GZQ3 224 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 HIF1ANQ9NWT6 349 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 PFDN2Q9UHV9 154 aa17.08■□□□□ 0.32
CLN3-209ENST00000561689 TBL2Q9Y4P3 447 aaKnown RBP17.08■□□□□ 0.32
CLN3-209ENST00000561689 NPFFO15130 113 aa17.07■□□□□ 0.32
CLN3-209ENST00000561689 IFNA10P01566 189 aa17.07■□□□□ 0.32
CLN3-209ENST00000561689 HABP2Q14520 560 aaPredicted RBP17.07■□□□□ 0.32
CLN3-209ENST00000561689 FBLN7Q53RD9 439 aa17.07■□□□□ 0.32
CLN3-209ENST00000561689 HSD17B11Q8NBQ5 300 aa17.07■□□□□ 0.32
CLN3-209ENST00000561689 TSNAXQ99598 290 aaKnown RBP17.07■□□□□ 0.32
CLN3-209ENST00000561689 ATP5SQ99766 215 aa17.07■□□□□ 0.32
CLN3-209ENST00000561689 ENY2Q9NPA8 101 aa17.07■□□□□ 0.32
CLN3-209ENST00000561689 C15orf62A8K5M9 175 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 SCO1O75880 301 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 HBG1P69891 147 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 HBG2P69892 147 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 PRCDQ00LT1 54 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 ZNF266Q14584 549 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 MRGPRG-AS1Q2M3A8 158 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 C10orf55Q5SWW7 151 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 TEX45Q8NA69 505 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 OR5B3Q8NH48 314 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 LINC00052Q96N35 136 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 C7orf69Q9H7B7 122 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 TNCP24821 2201 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 OOSP1A8MZH6 123 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 E7EUB6 86 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 F2RL1P55085 397 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 HES1Q14469 280 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 MBD6Q96DN6 1003 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 MALSU1Q96EH3 234 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 ARV1Q9H2C2 271 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 PLEKHA3Q9HB20 300 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 METTL1Q9UBP6 276 aaKnown RBP17.06■□□□□ 0.32
CLN3-209ENST00000561689 CELSR1Q9NYQ6 3014 aa17.06■□□□□ 0.32
CLN3-209ENST00000561689 TET2Q6N021 2002 aaPredicted RBP17.05■□□□□ 0.32
CLN3-209ENST00000561689 RRHO14718 337 aa17.05■□□□□ 0.32
CLN3-209ENST00000561689 CRYGBP07316 175 aa17.05■□□□□ 0.32
CLN3-209ENST00000561689 SNRNP70P08621 437 aaKnown RBP17.05■□□□□ 0.32
CLN3-209ENST00000561689 RUSC1-AS1Q66K80 236 aa17.05■□□□□ 0.32
CLN3-209ENST00000561689 LILRB2Q8N423 598 aa17.05■□□□□ 0.32
CLN3-209ENST00000561689 OR10W1Q8NGF6 305 aa17.05■□□□□ 0.32
CLN3-209ENST00000561689 LRRC20Q8TCA0 184 aa17.05■□□□□ 0.32
CLN3-209ENST00000561689 SIGLEC9Q9Y336 463 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms