RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SSMEM1Q8WWF3 244 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 CCL21O00585 134 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 DVL1O14640 695 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 TMPRSS3P57727 454 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 GNB2P62879 340 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 FAM90A2PQ658T7 463 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 MOB3BQ86TA1 216 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 C15orf54Q8N8G6 183 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 MS4A5Q9H3V2 200 aa8.69□□□□□ -1.02
CUX1-217ENST00000558836 SEBOXQ9HB31 216 aaPredicted RBP8.69□□□□□ -1.02
CUX1-217ENST00000558836 KIAA0141Q14154 515 aaPredicted RBP8.68□□□□□ -1.02
CUX1-217ENST00000558836 RHEBQ15382 184 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 ATP6V1FQ16864 119 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 SLC25A48Q6ZT89 311 aaKnown RBP8.68□□□□□ -1.02
CUX1-217ENST00000558836 Q8N7P7 452 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 OR13D1Q8NGV5 346 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 RPUSD4Q96CM3 377 aaKnown RBP8.68□□□□□ -1.02
CUX1-217ENST00000558836 ZNF714Q96N38 554 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 VKORC1Q9BQB6 163 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 MRPL20Q9BYC9 149 aaKnown RBP8.68□□□□□ -1.02
CUX1-217ENST00000558836 SLC35D1Q9NTN3 355 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 CISD1Q9NZ45 108 aaKnown RBP8.68□□□□□ -1.02
CUX1-217ENST00000558836 C15orf61A6NNL5 157 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 RBFOX2O43251 390 aaKnown RBP eCLIP8.68□□□□□ -1.022e-7■■■■□ 20.8
CUX1-217ENST00000558836 CD81P60033 236 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 UBE2G2P60604 165 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 SNRPEP62304 92 aaKnown RBP8.68□□□□□ -1.02
CUX1-217ENST00000558836 MLANAQ16655 118 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 NCMAPQ5T1S8 102 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 TREML4Q6UXN2 200 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 TMEM204Q9BSN7 226 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 SMDT1Q9H4I9 107 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 LINC00312Q9Y6C7 94 aa8.68□□□□□ -1.02
CUX1-217ENST00000558836 TRAV20A0A0B4J274 112 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 SIAH2O43255 324 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 RAB5AP20339 215 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 THBS3P49746 956 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 RPP30P78346 268 aaKnown RBP8.67□□□□□ -1.02
CUX1-217ENST00000558836 MIC13Q5XKP0 118 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 TVP23CQ96ET8 276 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 OR51B2Q9Y5P1 312 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 NDUFB3O43676 98 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 CA2P00918 260 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 MT-ND4LP03901 98 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 C1orf87Q8N0U7 546 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 OR10W1Q8NGF6 305 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 UNKLQ9H9P5 680 aaKnown RBP8.67□□□□□ -1.02
CUX1-217ENST00000558836 CELSR1Q9NYQ6 3014 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 IGHV3-72A0A0B4J1Y9 119 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 PAGE4O60829 102 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 CD3EP07766 207 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 CLEC2AQ6UVW9 174 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 CENPVQ7Z7K6 275 aaPredicted RBP8.67□□□□□ -1.02
CUX1-217ENST00000558836 OR5T1Q8NG75 326 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 OR4F5Q8NH21 305 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 CORO2AQ92828 525 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 OR4F4Q96R69 305 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 MGST2Q99735 147 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 PARD6GQ9BYG4 376 aaPredicted RBP8.67□□□□□ -1.02
CUX1-217ENST00000558836 NGBQ9NPG2 151 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 AURKAIP1Q9NWT8 199 aaPredicted RBP8.67□□□□□ -1.02
CUX1-217ENST00000558836 VAX2Q9UIW0 290 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 TIMM9Q9Y5J7 89 aa8.67□□□□□ -1.02
CUX1-217ENST00000558836 CTXND1A0A1B0GTU2 59 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 VSTM5A8MXK1 200 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 E7EUB6 86 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 J3QR06 171 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 CXCL1P09341 107 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 CHRNB4P30926 498 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 HSPE1P61604 102 aaKnown RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 MEF2BQ02080 365 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 VWC2Q2TAL6 325 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 LRRC10Q5BKY1 277 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 ARSJQ5FYB0 599 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 OR51G1Q8NGK1 321 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 OR10X1Q8NGY0 326 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 C1orf159Q96HA4 380 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 DIRC2Q96SL1 478 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 SSX3Q99909 188 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 ACTR3CQ9C0K3 210 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 GAL3ST2Q9H3Q3 398 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 RAB9BQ9NP90 201 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 WDR83OSQ9Y284 106 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 TGIF2-C20orf24A0A0A6YYL0 155 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 IGHV1-69-2A0A0G2JMI3 117 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 C1orf196B1AJZ1 125 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 SAA1P0DJI8 122 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 MDKP21741 143 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 KIR2DS2P43631 304 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 RPS10P46783 165 aaKnown RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 S100A12P80511 92 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 PDLIM3Q53GG5 364 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 HEPN1Q6WQI6 88 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 KDF1Q8NAX2 398 aaPredicted RBP8.66□□□□□ -1.02
CUX1-217ENST00000558836 SLC24A4Q8NFF2 622 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 NCOR1P1Q9H4R4 102 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 ENY2Q9NPA8 101 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 TMEM14BQ9NUH8 114 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 PKD1L2Q7Z442 2459 aa8.66□□□□□ -1.02
CUX1-217ENST00000558836 CACNA1BQ00975 2339 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms