RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ATG101Q9BSB4 218 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 METRNQ9UJH8 293 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 COLQQ9Y215 455 aaPredicted RBP13.45□□□□□ -0.26
SHMT2-231ENST00000557433 A0A1B0GUS0 222 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 CFHR2P36980 270 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 LINC00310P59036 64 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 HSPE1P61604 102 aaKnown RBP13.45□□□□□ -0.26
SHMT2-231ENST00000557433 PRR20EP86478 221 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 PRR20CP86479 221 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 PRR20DP86480 221 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 PRR20BP86481 221 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 PRR20AP86496 221 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 TMEM105Q8N8V8 129 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 OR4B1Q8NGF8 309 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 Q8TCH9 128 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 DDB2Q92466 427 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 ADTRPQ96IZ2 230 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 SAMD10Q9BYL1 202 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 OSTCQ9NRP0 149 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 ZNF586Q9NXT0 402 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 CLCF1Q9UBD9 225 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 IL19Q9UHD0 177 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 V9GYV3 84 aa13.45□□□□□ -0.26
SHMT2-231ENST00000557433 GTF3C1Q12789 2109 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 LYZL6O75951 148 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 REG1AP05451 166 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 OR5G3P0C626 314 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 BRS3P32247 399 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 LINC00205P59089 165 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 ABHD12Q8N2K0 398 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 PNKDQ8N490 385 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 SIGLECL1Q8N7X8 197 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 LRRC29Q8WV35 223 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 C1orf159Q96HA4 380 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 SLC35E1Q96K37 410 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 IFI27L2Q9H2X8 130 aa13.44□□□□□ -0.26
SHMT2-231ENST00000557433 TRIOO75962 3097 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 SNURFLB1AK76 121 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 ZNF25P17030 456 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-231ENST00000557433 THBS3P49746 956 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 GNG4P50150 75 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 CX3CL1P78423 397 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 GUSBP1Q15486 140 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 POU2AF1Q16633 256 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 ARSJQ5FYB0 599 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-231ENST00000557433 TPRX1Q8N7U7 411 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 SSMEM1Q8WWF3 244 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 NEUROG1Q92886 237 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 SEPSECSQ9HD40 501 aaKnown RBP13.43□□□□□ -0.26
SHMT2-231ENST00000557433 TMEM14BQ9NUH8 114 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 PTPRBP23467 1997 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 SRRM5B3KS81 715 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 DLEU1O43261 78 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 LOXL3P58215 753 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 HLA-DRB5Q30154 266 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 PQLC2Q6ZP29 291 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 GCSAMQ8N6F7 178 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 RNF2Q99496 336 aa13.43□□□□□ -0.26
SHMT2-231ENST00000557433 TECRQ9NZ01 308 aaKnown RBP13.43□□□□□ -0.26
SHMT2-231ENST00000557433 HELTA6NFD8 242 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 LINC00614P0C842 121 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 BTF3P20290 206 aaKnown RBP13.42□□□□□ -0.26
SHMT2-231ENST00000557433 IER3P46695 156 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 ARG2P78540 354 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 EDDM3AQ14507 147 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 TIGITQ495A1 244 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 KRTCAP3Q53RY4 240 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 LRP11Q86VZ4 500 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 OR4P4Q8NGL7 312 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 LRFN3Q9BTN0 628 aa13.42□□□□□ -0.26
SHMT2-231ENST00000557433 DOCK11Q5JSL3 2073 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 SLC17A3O00476 420 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 ISLRO14498 428 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 GPX1P07203 203 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 TAS2R45P59539 299 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 PRNDQ9UKY0 176 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 ZNF257Q9Y2Q1 563 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 IGLV1-44P01699 117 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 IGHG3P01860 377 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 HLA-DQA1P01909 254 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 HNF1AP20823 631 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 G0S2P27469 103 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 TMEM30BQ3MIR4 351 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 FAM169BQ8N8A8 192 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 DCTN5Q9BTE1 182 aa13.41□□□□□ -0.26
SHMT2-231ENST00000557433 VCANP13611 3396 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 TRAV3A0A0B4J244 114 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 LTC4SQ16873 150 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 RPL39P5Q59GN2 51 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 CENPWQ5EE01 88 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 RNFT1Q5M7Z0 435 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 RASL11AQ6T310 242 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 TMEM208Q9BTX3 173 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 PRO3102Q9H379 93 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 GOLT1BQ9Y3E0 138 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 DNAJC13O75165 2243 aa13.4□□□□□ -0.26
SHMT2-231ENST00000557433 IGKV1D-17A0A075B6S4 117 aa13.39□□□□□ -0.27
SHMT2-231ENST00000557433 CA2P00918 260 aa13.39□□□□□ -0.27
SHMT2-231ENST00000557433 CECR9P0C854 216 aa13.39□□□□□ -0.27
SHMT2-231ENST00000557433 LINC00869P0C866 280 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms