RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CXorf66Q5JRM2 361 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-229ENST00000557348 ARL6IP6Q8N6S5 226 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 C8orf31Q8N9H6 132 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 NEUROG1Q92886 237 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 RHOVQ96L33 236 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF714Q96N38 554 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 CIB3Q96Q77 187 aaPredicted RBP10.43□□□□□ -0.74
SHMT2-229ENST00000557348 S1PR3Q99500 378 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 ATP5SQ99766 215 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 SH3BGRL3Q9H299 93 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 NAT8Q9UHE5 227 aa10.43□□□□□ -0.74
SHMT2-229ENST00000557348 A0A0G2JRQ6 117 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 TMEM250H0YL14 139 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 CHST1O43916 411 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 ZG16O60844 167 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 P0C879 139 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 BCL2P10415 239 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 LOXP28300 417 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-229ENST00000557348 ERVFC1-1P60608 527 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 ERVK-16P61578 105 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 RANP62826 216 aaKnown RBP10.42□□□□□ -0.74
SHMT2-229ENST00000557348 LCN2P80188 198 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 USF2Q15853 346 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-229ENST00000557348 LTC4SQ16873 150 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 FAM90A2PQ658T7 463 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 H2BFWTQ7Z2G1 175 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 OR4S2Q8NH73 311 aa10.42□□□□□ -0.74
SHMT2-229ENST00000557348 NEU4Q8WWR8 484 aaPredicted RBP10.42□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF727A8MUV8 499 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 M0R1X1 148 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 RD3LP0DJH9 198 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 GRNP28799 593 aaKnown RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 RPL30P62888 115 aaKnown RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 TNFRSF9Q07011 255 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 CYP2G1PQ6ZSU1 146 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 SLC25A48Q6ZT89 311 aaKnown RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 ZCCHC24Q8N2G6 241 aaKnown RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF439Q8NDP4 499 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 TMEM170AQ8WVE7 144 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 C5orf30Q96GV9 206 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 OR5B12Q96R08 314 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 CHODLQ9H9P2 273 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 HSPB7Q9UBY9 170 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 MARCH11A6NNE9 402 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 C17orf98A8MV24 154 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 KIAA1324LA8MWY0 1029 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 SIAH2O43255 324 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 C1QL1O75973 258 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 PLAUP00749 431 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 KRASP01116 189 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 AMBPP02760 352 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 SRP14P37108 136 aaKnown RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 HBG1P69891 147 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 HBG2P69892 147 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF816Q0VGE8 651 aaPredicted RBP10.41□□□□□ -0.74
SHMT2-229ENST00000557348 FAM71F2Q6NXP2 309 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 TCF23Q7RTU1 214 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 TGIF2LXQ8IUE1 241 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF664Q8N3J9 261 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 TIMD4Q96H15 378 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 MAGT1Q9H0U3 335 aa10.41□□□□□ -0.74
SHMT2-229ENST00000557348 FAM24AA6NFZ4 105 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 LINC00473A8K010 186 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 SOX15O60248 233 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 RAMP3O60896 148 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 S1PR2O95136 353 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 VENTXO95231 258 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 PFN1P07737 140 aaKnown RBP10.4□□□□□ -0.74
SHMT2-229ENST00000557348 CD99P14209 185 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 AARDQ4LEZ3 155 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 C1orf194Q5T5A4 169 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 ZNF343Q6P1L6 599 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 OR4X1Q8NH49 305 aa10.4□□□□□ -0.74
SHMT2-229ENST00000557348 BSCL2Q96G97 398 aaPredicted RBP10.4□□□□□ -0.74
SHMT2-229ENST00000557348 DYSFO75923 2080 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 IGSF23A1L1A6 192 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 FCGR3BO75015 233 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 RBP4P02753 201 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 OMGP23515 440 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 G6PCP35575 357 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 CCL20P78556 96 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 CT45A1Q5HYN5 189 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 DUX4L9Q6RFH8 374 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-229ENST00000557348 Q6ZRM9 215 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 DTX2Q86UW9 622 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 LINC00311Q8N616 119 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 OR5C1Q8NGR4 320 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 CT45A3Q8NHU0 189 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 ITLN2Q8WWU7 325 aaPredicted RBP10.39□□□□□ -0.75
SHMT2-229ENST00000557348 H1FXQ92522 213 aaKnown RBP10.39□□□□□ -0.75
SHMT2-229ENST00000557348 PSENENQ9NZ42 101 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 TIMM9Q9Y5J7 89 aa10.39□□□□□ -0.75
SHMT2-229ENST00000557348 TANC2Q9HCD6 1990 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 SAA2-SAA4A0A096LPE2 208 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 KIR2DL5BA0A0G2JN68 375 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 KIR2DL5BA0A0G2JPC4 375 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 HRASP01112 189 aa10.38□□□□□ -0.75
SHMT2-229ENST00000557348 SAA2P0DJI9 122 aaPredicted RBP10.38□□□□□ -0.75
SHMT2-229ENST00000557348 RPP30P78346 268 aaKnown RBP10.38□□□□□ -0.75
SHMT2-229ENST00000557348 CDSNQ15517 529 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms