RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SLA2Q9H6Q3 261 aa10.59□□□□□ -0.71
SHMT2-228ENST00000557302 ZNF355PQ9NSJ1 428 aa10.59□□□□□ -0.71
SHMT2-228ENST00000557302 GPR132Q9UNW8 380 aa10.59□□□□□ -0.71
SHMT2-228ENST00000557302 VSIG4Q9Y279 399 aa10.59□□□□□ -0.71
SHMT2-228ENST00000557302 TRAV3A0A0B4J244 114 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 H3BUA1 57 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 B3GALNT1O75752 331 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 FGF2P09038 288 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 OR9G9P0C7N8 305 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 TPPP2P59282 170 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 KIAA0141Q14154 515 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-228ENST00000557302 BAK1Q16611 211 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 CADM3Q8N126 398 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 ZNF491Q8N8L2 437 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 C4orf3Q8WVX3 66 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 MS4A10Q96PG2 267 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 FYTTD1Q96QD9 318 aaKnown RBP10.58□□□□□ -0.72
SHMT2-228ENST00000557302 TP53RKQ96S44 253 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 COMMD5Q9GZQ3 224 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 COA4Q9NYJ1 87 aa10.58□□□□□ -0.72
SHMT2-228ENST00000557302 TEX13DA0A0J9YY54 714 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-228ENST00000557302 TEX22C9J3V5 150 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 SNAPC5O75971 98 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 IGKV1-39P01597 117 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 TRGV3P03979 118 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 IGKV1D-39P04432 117 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 MYOD1P15172 320 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 MYCNOSP40205 109 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 LINC00299Q6ZSB3 139 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 SEC22AQ96IW7 307 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 TSC22D3Q99576 134 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 SDHCQ99643 169 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-228ENST00000557302 NAA60Q9H7X0 242 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 GNB4Q9HAV0 340 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 PTTG2Q9NZH5 202 aa10.57□□□□□ -0.72
SHMT2-228ENST00000557302 NOTCH3Q9UM47 2321 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 HMX3A6NHT5 357 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 ATG12O94817 140 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 BRI3O95415 125 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 UCP1P25874 307 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 OR2B8PP59922 312 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 TRIM16LQ309B1 348 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 DEFB136Q30KP8 78 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 SP6Q3SY56 376 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 ETV3LQ6ZN32 361 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 H2BFWTQ7Z2G1 175 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 SLC25A42Q86VD7 318 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 TTC9CQ8N5M4 171 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 ADAD2Q8NCV1 583 aaKnown RBP10.56□□□□□ -0.72
SHMT2-228ENST00000557302 RAX2Q96IS3 184 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 OR5B12Q96R08 314 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 AKIP1Q9NQ31 210 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 PRNDQ9UKY0 176 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 CMYA5Q8N3K9 4069 aa10.56□□□□□ -0.72
SHMT2-228ENST00000557302 A0A0G2JLM5 398 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 A0A1B0GW64 132 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 NAP1L6A6NFF2 107 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 CRYM-AS1A6NIL9 109 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 E7EUB6 86 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 I3L521 148 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 CCL24O00175 119 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 OR5AC1P0C628 307 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 IL7P13232 177 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 CD33P20138 364 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 AKR1C2P52895 323 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 RUNX1Q01196 453 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 DHODHQ02127 395 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 SGPP2Q8IWX5 399 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 MRPL41Q8IXM3 137 aaKnown RBP10.55□□□□□ -0.72
SHMT2-228ENST00000557302 OR1L8Q8NGR8 309 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 S100ZQ8WXG8 99 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 DUX3Q96PT4 197 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 P2RX4Q99571 388 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 QTRT1Q9BXR0 403 aaKnown RBP10.55□□□□□ -0.72
SHMT2-228ENST00000557302 TMEM222Q9H0R3 208 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 FKBP11Q9NYL4 201 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 ZNF257Q9Y2Q1 563 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 NSG2Q9Y328 171 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 OR51B2Q9Y5P1 312 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 NOTCH1P46531 2555 aa10.55□□□□□ -0.72
SHMT2-228ENST00000557302 C13orf42A0A1B0GVH6 325 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 LINC00854A0A1B0GVQ3 168 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 NPIPB5A8MRT5 1133 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 IGHV3-11P01762 117 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 LGALS1P09382 135 aaKnown RBP10.54□□□□□ -0.72
SHMT2-228ENST00000557302 TRAPPC2P0DI81 140 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 TRAPPC2BP0DI82 140 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 AREGP15514 252 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 THOC7Q6I9Y2 204 aaKnown RBP10.54□□□□□ -0.72
SHMT2-228ENST00000557302 LINC00482Q8N8I6 264 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 WFDC9Q8NEX5 89 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 OR11H1Q8NG94 326 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 OR4A16Q8NH70 328 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 TMEM230Q96A57 120 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 SLC25A21Q9BQT8 299 aaPredicted RBP10.54□□□□□ -0.72
SHMT2-228ENST00000557302 SRSF8Q9BRL6 282 aaKnown RBP10.54□□□□□ -0.72
SHMT2-228ENST00000557302 KCNIP3Q9Y2W7 256 aa10.54□□□□□ -0.72
SHMT2-228ENST00000557302 TEX50A0A1B0GTY4 177 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 CGB1A6NKQ9 187 aa10.53□□□□□ -0.72
SHMT2-228ENST00000557302 C15orf61A6NNL5 157 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms