RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 EXTL2Q9UBQ6 330 aa9.46□□□□□ -0.9
SHMT2-223ENST00000556689 TP53TG1Q9Y2A0 90 aa9.46□□□□□ -0.9
SHMT2-223ENST00000556689 TRBV6-7A0A0A0MS04 114 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 SPRY2O43597 315 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 SCAF4O95104 1147 aaKnown RBP9.45□□□□□ -0.9
SHMT2-223ENST00000556689 GSTT2P0CG29 244 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 GSTT2BP0CG30 244 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 BMI1P35226 326 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 IL18Q14116 193 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 TM4SF20Q53R12 229 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 Q6ZWC4 215 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 LYG2Q86SG7 212 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 MMD2Q8IY49 270 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 UXS1Q8NBZ7 420 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 CACNG8Q8WXS5 425 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 C5orf30Q96GV9 206 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 WDR12Q9GZL7 423 aaKnown RBP9.45□□□□□ -0.9
SHMT2-223ENST00000556689 MLXQ9UH92 298 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 FBXL7Q9UJT9 491 aa9.45□□□□□ -0.9
SHMT2-223ENST00000556689 ATF4P18848 351 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-223ENST00000556689 DUTP33316 252 aaKnown RBP9.44□□□□□ -0.9
SHMT2-223ENST00000556689 ARL3P36405 182 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 CDK10Q15131 360 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 PLAC9Q5JTB6 97 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 OR4A47Q6IF82 309 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 RAB3CQ96E17 227 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 CABLES2Q9BTV7 478 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 ZNF257Q9Y2Q1 563 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 PCLOQ9Y6V0 5065 aa9.44□□□□□ -0.9
SHMT2-223ENST00000556689 DNAH10Q8IVF4 4471 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 TMEM213A2RRL7 107 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 FABP12A6NFH5 140 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 HMX3A6NHT5 357 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 LINC00473A8K010 186 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 UBE2CO00762 179 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 DIRAS3O95661 229 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 IGHV3-23P01764 117 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 SAA1P0DJI8 122 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-223ENST00000556689 ELK1P19419 428 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 PTBP1P26599 531 aaKnown RBP eCLIP9.43□□□□□ -0.9
SHMT2-223ENST00000556689 INPP1P49441 399 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 APOC4P55056 127 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 GNG2P59768 71 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 MRPS10P82664 201 aaKnown RBP9.43□□□□□ -0.9
SHMT2-223ENST00000556689 C10orf55Q5SWW7 151 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 LGALS9CQ6DKI2 356 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 CNIH2Q6PI25 160 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 CLEC19AQ6UXS0 136 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 RBPMS2Q6ZRY4 209 aaKnown RBP9.43□□□□□ -0.9
SHMT2-223ENST00000556689 TMEM217Q8N7C4 229 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 OR5H6Q8NGV6 325 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 OR10R2Q8NGX6 335 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 SLC25A38Q96DW6 304 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 GINS4Q9BRT9 223 aa9.43□□□□□ -0.9
SHMT2-223ENST00000556689 TRAV25A0A0B4J276 109 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 XRCC3O43542 346 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 DEDDO75618 318 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 EIF4EP06730 217 aaKnown RBP9.42□□□□□ -0.9
SHMT2-223ENST00000556689 FCGR3AP08637 254 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 ARFRP1Q13795 201 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 ZNF846Q147U1 533 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 SLC38A6Q8IZM9 456 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 OR2C3Q8N628 320 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 OR1L6Q8NGR2 347 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 EEF1AKMT3Q96AZ1 226 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 IFT46Q9NQC8 304 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 MRPS7Q9Y2R9 242 aaKnown RBP9.42□□□□□ -0.9
SHMT2-223ENST00000556689 KCNK7Q9Y2U2 307 aa9.42□□□□□ -0.9
SHMT2-223ENST00000556689 TRAV18A0A075B6X5 111 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 NPIPB5A8MRT5 1133 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 A8MWP6 167 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 TEX22C9J3V5 150 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 CTDSP2O14595 271 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 FCGR3BO75015 233 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 DHFRP00374 187 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 CLEC3BP05452 202 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 HIST1H1DP16402 221 aaKnown RBP9.41□□□□□ -0.9
SHMT2-223ENST00000556689 TNFSF8P32971 234 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 DEFB135Q30KP9 77 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 PYDC2Q56P42 97 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 BTNL8Q6UX41 500 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 PHLDA1Q8WV24 401 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-223ENST00000556689 MARC2Q969Z3 335 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 CCDC140Q96MF4 163 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 FANCD2OSQ96PS1 177 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 SLC2A9Q9NRM0 540 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 PRELID3BQ9Y3B1 194 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 S4R3C0 116 aa9.41□□□□□ -0.9
SHMT2-223ENST00000556689 KIR2DL5BA0A0G2JN68 375 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 KIR2DL5BA0A0G2JPC4 375 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 CRYGCP07315 174 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 IL6RP08887 468 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-223ENST00000556689 C8orf88P0DMB2 117 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 CBX5P45973 191 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 RPL27AP46776 148 aaKnown RBP9.4□□□□□ -0.9
SHMT2-223ENST00000556689 TAS2R20P59543 309 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 ZNF585BQ52M93 769 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 TRIQKQ629K1 86 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 C19orf35Q6ZS72 473 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 SNX29P2Q8IUI4 249 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms