RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 MSGN1A6NI15 193 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 G3V318 75 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 DUS4LO95620 317 aaKnown RBP11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 HOXB5P09067 269 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 COMPP49747 757 aaPredicted RBP11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 ZNF329Q86UD4 541 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 STPG2Q8N412 459 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 LFNGQ8NES3 379 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 PRNDQ9UKY0 176 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 OR51B2Q9Y5P1 312 aa11.07□□□□□ -0.64
VIPAS39-208ENST00000556412 TRAV41A0A0B4J266 112 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 A0A0B4J2A0 478 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 A0A1B0GUS0 222 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 IL6RP08887 468 aaPredicted RBP11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 MAS1LP35410 378 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 RPL27AP46776 148 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 MECP2P51608 486 aaKnown RBP11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 UNQ5815/PRO19632Q6UWF5 114 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 ZNF431Q8TF32 576 aaPredicted RBP11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 GPR146Q96CH1 333 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 MDFIQ99750 246 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 MARVELD1Q9BSK0 173 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 SHPKQ9UHJ6 478 aa11.06□□□□□ -0.64
VIPAS39-208ENST00000556412 PIGBOS1A0A0B4J2F0 54 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 DBX1A6NMT0 343 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 C15orf61A6NNL5 157 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 DHFRP00374 187 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 IGF1P05019 195 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 FAM219AQ8IW50 185 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 C11orf44Q8N8P7 122 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 SGMS2Q8NHU3 365 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 CHPT1Q8WUD6 406 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 QTRT1Q9BXR0 403 aaKnown RBP11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 GPN1Q9HCN4 374 aaPredicted RBP11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 CACNG5Q9UF02 275 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 PSMB11A5LHX3 300 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 HMX3A6NHT5 357 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 ADAP1O75689 374 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 NXPH3O95157 252 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 EGR2P11161 476 aaPredicted RBP11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 FBN1P35555 2871 aaKnown RBP11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 PROK1P58294 105 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 SLC35B1P78383 322 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 TMEM267Q0VDI3 215 aaPredicted RBP11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 C10orf99Q6UWK7 81 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 C12orf54Q6X4T0 127 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 Q6ZRM9 215 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 LRTM2Q8N967 370 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 MITD1Q8WV92 249 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 LSM10Q969L4 123 aaKnown RBP11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 SPIN2AQ99865 258 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 SPIN2BQ9BPZ2 258 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 PDCD10Q9BUL8 212 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 GON7Q9BXV9 100 aa11.05□□□□□ -0.64
VIPAS39-208ENST00000556412 C2CD3Q4AC94 2353 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 A0A0B4J293 547 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 TEX50A0A1B0GTY4 177 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 A0A1W2PN81 502 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 E7EUB6 86 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 PRAF2O60831 178 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 IL5P05113 134 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 P0C879 139 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 CHRNA7P36544 502 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 SPINK9Q5DT21 86 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 GGNBP1Q5YKI7 109 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 WNT10AQ9GZT5 417 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 FKBP11Q9NYL4 201 aa11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 FOXA2Q9Y261 457 aaPredicted RBP11.04□□□□□ -0.64
VIPAS39-208ENST00000556412 DUXBA0A1W2PPF3 345 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 IFNA21P01568 189 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 IFNA17P01571 189 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 SULT1A3P0DMM9 295 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 SULT1A4P0DMN0 295 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 NMSQ5H8A3 153 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 HIST2H2BDQ6DRA6 164 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 THOC7Q6I9Y2 204 aaKnown RBP11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 CADM3Q8N126 398 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 C12orf45Q8N5I9 185 aaPredicted RBP11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 OR5T1Q8NG75 326 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 OR5AU1Q8NGC0 362 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 OR1L8Q8NGR8 309 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 ZNF355PQ9NSJ1 428 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 TMEM14BQ9NUH8 114 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 TMED3Q9Y3Q3 217 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 ATRQ13535 2644 aa11.03□□□□□ -0.64
VIPAS39-208ENST00000556412 ST8SIA3O43173 380 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 REG1AP05451 166 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 TRAPPC2P0DI81 140 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 TRAPPC2BP0DI82 140 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 SRSF4Q08170 494 aaKnown RBP11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 TATDN3Q17R31 274 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 C3orf56Q8N813 242 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 OR5B3Q8NH48 314 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 OR1S1Q8NH92 325 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 WFDC12Q8WWY7 111 aa11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.02□□□□□ -0.64
VIPAS39-208ENST00000556412 A0A1B0GW64 132 aa11.02□□□□□ -0.65
VIPAS39-208ENST00000556412 FAM25EA8MYX2 175 aa11.02□□□□□ -0.65
VIPAS39-208ENST00000556412 TEX22C9J3V5 150 aa11.02□□□□□ -0.65
VIPAS39-208ENST00000556412 CCSO14618 274 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms