RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 ABHD1Q96SE0 405 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 ELOVL1Q9BW60 279 aa15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 C6orf62Q9GZU0 229 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-210ENST00000555995 TRBV9A0A0B4J1U6 114 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 TEX22C9J3V5 150 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 M0QYG6 137 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 UPK2O00526 184 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 CTDSP2O14595 271 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 CYB5BO43169 146 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 CD3DP04234 171 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 HIST1H1BP16401 226 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 RHOGP84095 191 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 HSD17B13Q7Z5P4 300 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 SMIM4Q8WVI0 70 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 TSC22D3Q99576 134 aa15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 PEF1Q9UBV8 284 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-210ENST00000555995 K7EIL1 84 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 CTDSPLO15194 276 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 SAP30O75446 220 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 ECI1P42126 302 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 ATP5G2Q06055 141 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 IL18Q14116 193 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 MEF2DQ14814 521 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 TATDN3Q17R31 274 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 PHLDA2Q53GA4 152 aa15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 RSL24D1Q9UHA3 163 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-210ENST00000555995 HMX3A6NHT5 357 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 CD74P04233 296 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 CRYGCP07315 174 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 IL6RP08887 468 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 PGAM2P15259 253 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 PSMB6P28072 239 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 LPAR6P43657 344 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 RND3P61587 244 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 EXOSC2Q13868 293 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 ACSM6Q6P461 480 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 TBC1D26Q86UD7 250 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 LHFPL1Q86WI0 220 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 OR6Q1Q8NGQ2 317 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 OR4C12Q96R67 309 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 QTRT1Q9BXR0 403 aaKnown RBP15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 AKIP1Q9NQ31 210 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 FKBP11Q9NYL4 201 aa15.89■□□□□ 0.13
CCDC88C-210ENST00000555995 ANKRD34BA5PLL1 514 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 CCDC160A6NGH7 325 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 SNAPC5O75971 98 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 RAB3DO95716 219 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 RPA2P15927 270 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 PTBP1P26599 531 aaKnown RBP eCLIP15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 OR2B8PP59922 312 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 RPEL1Q2QD12 228 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 STEAP1BQ6NZ63 245 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 CCDC71LQ8N9Z2 235 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 MCFD2Q8NI22 146 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 ZFAND1Q8TCF1 268 aa15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 SLIRPQ9GZT3 109 aaKnown RBP15.88■□□□□ 0.13
CCDC88C-210ENST00000555995 WI2-2373I1.2A0A1W2PRP0 233 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 DEFA4P12838 97 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 CTRB1P17538 263 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 CTRB2Q6GPI1 263 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 OR1L8Q8NGR8 309 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 THYN1Q9P016 225 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 PRNDQ9UKY0 176 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 ZNF256Q9Y2P7 627 aaPredicted RBP15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 CEPT1Q9Y6K0 416 aa15.87■□□□□ 0.13
CCDC88C-210ENST00000555995 TGP01266 2768 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 DISC1C4P0D8 188 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 B3GALNT1O75752 331 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 ATG12O94817 140 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 KRASP01116 189 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 SERPINE2P07093 398 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 ZNF45Q02386 682 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 KLK9Q2XQG4 91 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 C15orf32Q32M92 178 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 ZNF585BQ52M93 769 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 TERB2Q8NHR7 220 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 KLK9Q9UKQ9 250 aa15.86■□□□□ 0.13
CCDC88C-210ENST00000555995 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 E7EUB6 86 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 H0Y980 276 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 ZNF701M0R085 212 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 OR2J3O76001 311 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 PRH1P02810 166 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 TRAPPC2P0DI81 140 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 TRAPPC2BP0DI82 140 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 AREGP15514 252 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 PPP5CP53041 499 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 DEFA5Q01523 94 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 KLF5Q13887 457 aaPredicted RBP15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 SCGB2B2Q4G0G5 96 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 DEFB121Q5J5C9 76 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 OR5B3Q8NH48 314 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 NXF2Q9GZY0 626 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 COPZ2Q9P299 210 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 PEMTQ9UBM1 199 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 FBXL7Q9UJT9 491 aa15.85■□□□□ 0.13
CCDC88C-210ENST00000555995 A0A1B0GW64 132 aa15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 GSTZ1O43708 216 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 AKAIN1P0CW23 69 aa15.84■□□□□ 0.13
CCDC88C-210ENST00000555995 G6PCP35575 357 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms