RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 TRRAPQ9Y4A5 3859 aa11.18□□□□□ -0.62
CCDC88C-207ENST00000554051 PLXNB1O43157 2135 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 PIGBOS1A0A0B4J2F0 54 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 UPK2O00526 184 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 SNAPC5O75971 98 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 CTSDP07339 412 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 PIGPP57054 158 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 KIAA0141Q14154 515 aaPredicted RBP11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 BEAN1Q3B7T3 259 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 ASPHD1Q5U4P2 390 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 C18orf65Q6ZTR6 163 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 TTC9CQ8N5M4 171 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 OR11H1Q8NG94 326 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 OR4C16Q8NGL9 310 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 OR1N2Q8NGR9 330 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 GNB4Q9HAV0 340 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 PRNDQ9UKY0 176 aa11.17□□□□□ -0.62
CCDC88C-207ENST00000554051 LINC01619G3V211 115 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 HIST1H1BP16401 226 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 ZP3P21754 424 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 LPAR6P43657 344 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 RAB25P57735 213 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 DEFB136Q30KP8 78 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 PYDC2Q56P42 97 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 CCDC190Q86UF4 302 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 Q8N402 240 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 NECAP1Q8NC96 275 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 OR5T1Q8NG75 326 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 OR4D10Q8NGI6 311 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 OR13C8Q8NGS7 320 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 OR5B3Q8NH48 314 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 THAP7Q9BT49 309 aaPredicted RBP11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 QTRT1Q9BXR0 403 aaKnown RBP11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 V9GYH0 126 aa11.16□□□□□ -0.62
CCDC88C-207ENST00000554051 TEX22C9J3V5 150 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 G3V4G9 280 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 WIPF1O43516 503 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 HSPB1P04792 205 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 IL6RP08887 468 aaPredicted RBP11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 C10orf55Q5SWW7 151 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 TOMM5Q8N4H5 51 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 TRIM63Q969Q1 353 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 MS4A10Q96PG2 267 aa11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 FYTTD1Q96QD9 318 aaKnown RBP11.15□□□□□ -0.62
CCDC88C-207ENST00000554051 C3orf85A0A1B0GTC6 90 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 KRASP01116 189 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 CRYGCP07315 174 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 PSMB6P28072 239 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 INSL3P51460 131 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 OR2B8PP59922 312 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 DEFA6Q01524 100 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 ZNF585BQ52M93 769 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 C9orf66Q5T8R8 295 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 H2BFWTQ7Z2G1 175 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 GDPD1Q8N9F7 314 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 OR1L8Q8NGR8 309 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 MARCH1Q8TCQ1 289 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 LSM10Q969L4 123 aaKnown RBP11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 RANGRFQ9HD47 186 aaPredicted RBP11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 MCUBQ9NWR8 336 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 THYN1Q9P016 225 aa11.14□□□□□ -0.63
CCDC88C-207ENST00000554051 TRBV9A0A0B4J1U6 114 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 C15orf61A6NNL5 157 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 IGLL1P15814 213 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 UCP1P25874 307 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 G6PCP35575 357 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 AKR1C2P52895 323 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 RHOGP84095 191 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 DCTN2Q13561 401 aaKnown RBP11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 ZNF79Q15937 498 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 TRIM16LQ309B1 348 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 OXLD1Q5BKU9 147 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 OR51S1Q8NGJ8 323 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 OR6Q1Q8NGQ2 317 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 OR1L6Q8NGR2 347 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 TMEM56Q96MV1 263 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 DUX3Q96PT4 197 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 OR5B12Q96R08 314 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 CACFD1Q9UGQ2 172 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 TNCP24821 2201 aa11.13□□□□□ -0.63
CCDC88C-207ENST00000554051 TEX13DA0A0J9YY54 714 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 IGHV3-11P01762 117 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 TRAPPC2P0DI81 140 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 TRAPPC2BP0DI82 140 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 DEFA4P12838 97 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 CTRB1P17538 263 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 PI3P19957 117 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 INPP1P49441 399 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 DHODHQ02127 395 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 ATP5G2Q06055 141 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 KLF9Q13886 244 aaPredicted RBP11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 KLK9Q2XQG4 91 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 TRIQKQ629K1 86 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 CTRB2Q6GPI1 263 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 FAAP20Q6NZ36 180 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 ZNF343Q6P1L6 599 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 LINC00299Q6ZSB3 139 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 C1QL4Q86Z23 238 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 FAM219AQ8IW50 185 aa11.12□□□□□ -0.63
CCDC88C-207ENST00000554051 OR4A16Q8NH70 328 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms