RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 A6NNC1 897 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 C9JQL5 133 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 IGLV1-47P01700 117 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 SFTA3P0C7M3 94 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 PRCDQ00LT1 54 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 DIAPH2-AS1Q14236 149 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 HLA-DRB5Q30154 266 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 KIAA1456Q9P272 454 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 FLNCQ14315 2725 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 OR5B3Q8NH48 314 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 MBD3L1Q8WWY6 194 aa21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 RBMXL1Q96E39 390 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 EIF5A2Q9GZV4 153 aaKnown RBP21.37■■□□□ 1.01
CCDC88C-205ENST00000553403 PRSS46E5RG02 174 aa21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 RRHO14718 337 aa21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 F12P00748 615 aaPredicted RBP21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 DLK1P80370 383 aa21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 ATRAIDQ6UW56 229 aa21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 VSTM2AQ8TAG5 236 aa21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 SFT2D1Q8WV19 159 aa21.36■■□□□ 1.01
CCDC88C-205ENST00000553403 GOSR1O95249 250 aa21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 CCL20P78556 96 aa21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 DOCK11Q5JSL3 2073 aa21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 TET2Q6N021 2002 aaPredicted RBP21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 TMEM170AQ8WVE7 144 aa21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 VSIRQ9H7M9 311 aa21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 WDR83OSQ9Y284 106 aa21.35■■□□□ 1.01
CCDC88C-205ENST00000553403 TEX50A0A1B0GTY4 177 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 C22orf46C9J442 243 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 MBP02144 154 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 CD1BP29016 333 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 ATP5IP56385 69 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 SLC24A4Q8NFF2 622 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 TMEM167AQ8TBQ9 72 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 NKX6-2Q9C056 277 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 PLEKHA3Q9HB20 300 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 AMMECR1Q9Y4X0 333 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 ABCA4P78363 2273 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 A0A1B0GV50 99 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 C17orf112F2Z3M2 114 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 USF1P22415 310 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 NPY1RP25929 384 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 CDKN1AP38936 164 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 GPR6P46095 362 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 GUCA2BQ16661 112 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 ZNF709Q8N972 641 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 SUN5Q8TC36 379 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 SSBP3Q9BWW4 388 aaPredicted RBP21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 NPCDR1Q9BY65 106 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 KPTNQ9Y664 436 aa21.34■■□□□ 1.01
CCDC88C-205ENST00000553403 EFNA4P52798 201 aa21.33■■□□□ 1
CCDC88C-205ENST00000553403 BTN1A1Q13410 526 aa21.33■■□□□ 1
CCDC88C-205ENST00000553403 ONECUT1Q9UBC0 465 aa21.33■■□□□ 1
CCDC88C-205ENST00000553403 LOC105371242A0A075B767 164 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 RBFOX3A6NFN3 312 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 BUB1B-PAK6H3BSN5 160 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 M0R1W7 72 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 SOX15O60248 233 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 MPDU1O75352 247 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 IFNA4P05014 189 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 MYOD1P15172 320 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 LGALS7P47929 136 aa21.32■■□□□ 1
CCDC88C-205ENST00000553403 RCC1LQ96I51 464 aaKnown RBP21.32■■□□□ 1
CCDC88C-205ENST00000553403 SNAPINO95295 136 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 IGLV2-23P01705 113 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 ELLP55199 621 aaPredicted RBP21.31■■□□□ 1
CCDC88C-205ENST00000553403 RPL8P62917 257 aaKnown RBP21.31■■□□□ 1
CCDC88C-205ENST00000553403 SRSF1Q07955 248 aaKnown RBP eCLIP21.31■■□□□ 1
CCDC88C-205ENST00000553403 ZNF726P1Q15940 193 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 HINT2Q9BX68 163 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 RELNP78509 3460 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 COL12A1Q99715 3063 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 CA2P00918 260 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 PPT1P50897 306 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 VMA21Q3ZAQ7 101 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 ACSM6Q6P461 480 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 OR1L8Q8NGR8 309 aa21.31■■□□□ 1
CCDC88C-205ENST00000553403 HECTD1Q9ULT8 2610 aa21.3■■□□□ 1
CCDC88C-205ENST00000553403 MALRD1Q5VYJ5 2156 aa21.3■■□□□ 1
CCDC88C-205ENST00000553403 INS-IGF2F8WCM5 200 aa21.3■■□□□ 1
CCDC88C-205ENST00000553403 Q8N7P7 452 aa21.3■■□□□ 1
CCDC88C-205ENST00000553403 SLC35B3Q9H1N7 401 aa21.3■■□□□ 1
CCDC88C-205ENST00000553403 DOPEY2Q9Y3R5 2298 aa21.3■■□□□ 1
CCDC88C-205ENST00000553403 FNDC10F2Z333 226 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 COX7A1P24310 79 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 ZNF506Q5JVG8 444 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 FFAR4Q5NUL3 377 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 ZNF787Q6DD87 383 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 OR4P4Q8NGL7 312 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 COMMD5Q9GZQ3 224 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 NDUFA4L2Q9NRX3 87 aa21.29■■□□□ 1
CCDC88C-205ENST00000553403 DLX1P56177 255 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 CLDND2Q8NHS1 167 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 INSIG2Q9Y5U4 225 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 IGHV1-3A0A0C4DH29 117 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 LY6LH3BQJ8 138 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 BSXQ3C1V8 233 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 C2orf83Q53S99 150 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 TREML4Q6UXN2 200 aa21.28■■□□□ 1
CCDC88C-205ENST00000553403 PNKDQ8N490 385 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms