RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 CSN1S1P47710 185 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 RWDD2BP57060 319 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 HSPE1P61604 102 aaKnown RBP3.25□□□□□ -1.89
SCFD1-208ENST00000553278 HBA1P69905 142 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 AKR1C1Q04828 323 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 FAM229BQ4G0N7 80 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 KRTAP13-2Q52LG2 175 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 PRR9Q5T870 116 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 TMPPEQ6ZT21 453 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 OR11H6Q8NGC7 330 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 CAPZA3Q96KX2 299 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 IGF2BP2-AS1Q96M15 143 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 MIEN1Q9BRT3 115 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 C16orf95Q9H693 158 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 EFCAB1Q9HAE3 211 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 XAGE1AQ9HD64 81 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 CISHQ9NSE2 258 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 TXNL4BQ9NX01 149 aaKnown RBP3.25□□□□□ -1.89
SCFD1-208ENST00000553278 PYCARDQ9ULZ3 195 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 NUP160Q12769 1436 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 NID2Q14112 1375 aa3.25□□□□□ -1.89
SCFD1-208ENST00000553278 SEC16AO15027 2179 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 TRAV9-1A0A075B6T8 112 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 TXNDC9O14530 226 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 CDS2O95674 445 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 C8GP07360 202 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 ERP29P30040 261 aaKnown RBP3.24□□□□□ -1.89
SCFD1-208ENST00000553278 AP1S1P61966 158 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 IGFL1Q6UW32 110 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 SMIM15Q7Z3B0 74 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.24□□□□□ -1.89
SCFD1-208ENST00000553278 OR13C6PQ8NH95 151 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 CLDND2Q8NHS1 167 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 BOLA2Q9H3K6 86 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 UTP11Q9Y3A2 253 aaKnown RBP3.24□□□□□ -1.89
SCFD1-208ENST00000553278 HECW2Q9P2P5 1572 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 ROBO3Q96MS0 1386 aa3.24□□□□□ -1.89
SCFD1-208ENST00000553278 DPRXA6NFQ7 191 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 H0YJX3 145 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 GZMBP10144 247 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 HRES1P13985 223 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 CPMP14384 443 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 PPIBP23284 216 aaKnown RBP3.23□□□□□ -1.89
SCFD1-208ENST00000553278 COL8A2P25067 703 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 TAS2R41P59536 307 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 DEFB134Q4QY38 66 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 PYDC2Q56P42 97 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 C3orf33Q6P1S2 294 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 GOLT1AQ6ZVE7 132 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 CMTM2Q8TAZ6 248 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 C20orf27Q9GZN8 174 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 PCBD2Q9H0N5 130 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 C11orf68Q9H3H3 251 aaKnown RBP3.23□□□□□ -1.89
SCFD1-208ENST00000553278 PARVBQ9HBI1 364 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 TRPM3Q9HCF6 1732 aaPredicted RBP3.23□□□□□ -1.89
SCFD1-208ENST00000553278 FUT9Q9Y231 359 aa3.23□□□□□ -1.89
SCFD1-208ENST00000553278 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.22□□□□□ -1.89
SCFD1-208ENST00000553278 TMEM235A6NFC5 223 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 H3BPC8 53 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 HMGB3O15347 200 aaKnown RBP3.22□□□□□ -1.89
SCFD1-208ENST00000553278 ZNF682O95780 498 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 SULT1A3P0DMM9 295 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 SULT1A4P0DMN0 295 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 SMIM10L2AP0DMW4 78 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 SMIM10L2BP0DMW5 78 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 XCL1P47992 114 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 TCTAP57738 103 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 KRTAP10-5P60370 271 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 GNG3P63215 75 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 EIF4EBP2Q13542 120 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-208ENST00000553278 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.22□□□□□ -1.89
SCFD1-208ENST00000553278 IBA57Q5T440 356 aaKnown RBP3.22□□□□□ -1.89
SCFD1-208ENST00000553278 C2orf91Q6ZV80 131 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 AKAP14Q86UN6 197 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 MSRB3Q8IXL7 192 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 ZNF675Q8TD23 568 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 SMCR5Q8TEV8 140 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 TOMM6Q96B49 74 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 ZHX1-C8orf76Q96EF9 292 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 TTTY13Q9BZ97 58 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 MRPL16Q9NX20 251 aaKnown RBP3.22□□□□□ -1.89
SCFD1-208ENST00000553278 LCTP09848 1927 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 CACNA1SQ13698 1873 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 RALGAPA2Q2PPJ7 1873 aa3.22□□□□□ -1.89
SCFD1-208ENST00000553278 IGHV3-15A0A0B4J1V0 119 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 A0A1B0GV72 72 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 TRAPPC13A5PLN9 417 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 CIAO1O76071 339 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 PRM2P04554 102 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST1H2BOP23527 126 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST1H2BBP33778 126 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 CRYBA4P53673 196 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST1H2BDP58876 126 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST1H2BCP62807 126 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 CCL20P78556 96 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST2H2BEQ16778 126 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.21□□□□□ -1.9
SCFD1-208ENST00000553278 RPL22L1Q6P5R6 122 aaKnown RBP3.21□□□□□ -1.9
SCFD1-208ENST00000553278 OR13C4Q8NGS5 318 aa3.21□□□□□ -1.9
SCFD1-208ENST00000553278 HIST1H2BHQ93079 126 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms