RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 SP6Q3SY56 376 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 ZNF57Q68EA5 555 aaPredicted RBP10.98□□□□□ -0.65
PTCH1-226ENST00000553011 ZNF491Q8N8L2 437 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 FYTTD1Q96QD9 318 aaKnown RBP10.98□□□□□ -0.65
PTCH1-226ENST00000553011 OR5B12Q96R08 314 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 ZNF355PQ9NSJ1 428 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 VSIG4Q9Y279 399 aa10.98□□□□□ -0.65
PTCH1-226ENST00000553011 C3orf85A0A1B0GTC6 90 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 SERPINE2P07093 398 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 OR9G9P0C7N8 305 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 TPPP2P59282 170 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 DEFA5Q01523 94 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 ZNF45Q02386 682 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 TRIQKQ629K1 86 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 RAX2Q96IS3 184 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 SEC22AQ96IW7 307 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 UBE2E2Q96LR5 201 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 TMEM68Q96MH6 324 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 SPIN2AQ99865 258 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 SPIN2BQ9BPZ2 258 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 NSG2Q9Y328 171 aa10.97□□□□□ -0.65
PTCH1-226ENST00000553011 TEX13DA0A0J9YY54 714 aaPredicted RBP10.96□□□□□ -0.65
PTCH1-226ENST00000553011 LINC00854A0A1B0GVQ3 168 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 CGB1A6NKQ9 187 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 TRGV3P03979 118 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 CD40LGP29965 261 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 SLC6A1P30531 599 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 OR2B8PP59922 312 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 C19orf35Q6ZS72 473 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 ADAD2Q8NCV1 583 aaKnown RBP10.96□□□□□ -0.65
PTCH1-226ENST00000553011 C4orf3Q8WVX3 66 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 TMEM230Q96A57 120 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 NAA60Q9H7X0 242 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 AKIP1Q9NQ31 210 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 BATF3Q9NR55 127 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 COA4Q9NYJ1 87 aa10.96□□□□□ -0.65
PTCH1-226ENST00000553011 I3L521 148 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 CCL24O00175 119 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 IGHV3-11P01762 117 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 PRH1P02810 166 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 OR5AC1P0C628 307 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 IL7P13232 177 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 AREGP15514 252 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 UCP1P25874 307 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 INPP1P49441 399 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 TRIM16LQ309B1 348 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 DEDD2Q8WXF8 326 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 P2RX4Q99571 388 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 COMMD5Q9GZQ3 224 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 ALX4Q9H161 411 aaPredicted RBP10.95□□□□□ -0.66
PTCH1-226ENST00000553011 SLA2Q9H6Q3 261 aa10.95□□□□□ -0.66
PTCH1-226ENST00000553011 TEX50A0A1B0GTY4 177 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 CRYM-AS1A6NIL9 109 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 DBX1A6NMT0 343 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 H3BUA1 57 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 RBMXL2O75526 392 aaKnown RBP10.94□□□□□ -0.66
PTCH1-226ENST00000553011 SNAPC5O75971 98 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 IGKV1-5P01602 117 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 MYCNOSP40205 109 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 IZUMO4Q1ZYL8 232 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 H2BFWTQ7Z2G1 175 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 MRPL41Q8IXM3 137 aaKnown RBP10.94□□□□□ -0.66
PTCH1-226ENST00000553011 CADM3Q8N126 398 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 TTC9CQ8N5M4 171 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 LINC00482Q8N8I6 264 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 LHFPL5Q8TAF8 219 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 GLYATL2Q8WU03 294 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 SCGB3A2Q96PL1 93 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 PTTG2Q9NZH5 202 aa10.94□□□□□ -0.66
PTCH1-226ENST00000553011 REG1AP05451 166 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 FGF2P09038 288 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 LGALS1P09382 135 aaKnown RBP10.93□□□□□ -0.66
PTCH1-226ENST00000553011 P0C879 139 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 AKR1C4P17516 323 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 CD33P20138 364 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 CCR6P51684 374 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 AKR1C2P52895 323 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 RUNX1Q01196 453 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 LINC00299Q6ZSB3 139 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 TMED4Q7Z7H5 227 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 SGPP2Q8IWX5 399 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 WFDC9Q8NEX5 89 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 OR11H1Q8NG94 326 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 OR10W1Q8NGF6 305 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 HINT2Q9BX68 163 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 QTRT1Q9BXR0 403 aaKnown RBP10.93□□□□□ -0.66
PTCH1-226ENST00000553011 TMEM222Q9H0R3 208 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 OR51B2Q9Y5P1 312 aa10.93□□□□□ -0.66
PTCH1-226ENST00000553011 IGLC7A0M8Q6 106 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 C15orf61A6NNL5 157 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 NPIPB5A8MRT5 1133 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 B3GALNT1O75752 331 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 BRI3O95415 125 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 CDS2O95674 445 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 TRAPPC2P0DI81 140 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 TRAPPC2BP0DI82 140 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 CTRB1P17538 263 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 PSMB6P28072 239 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 RAB25P57735 213 aa10.92□□□□□ -0.66
PTCH1-226ENST00000553011 SUPT4H1P63272 117 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms