RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 SPRY3O43610 288 aa12.23□□□□□ -0.45
HOXC11-202ENST00000546378 Q6ZWC4 215 aa12.23□□□□□ -0.45
HOXC11-202ENST00000546378 ZNF439Q8NDP4 499 aa12.23□□□□□ -0.45
HOXC11-202ENST00000546378 OR5AU1Q8NGC0 362 aa12.23□□□□□ -0.45
HOXC11-202ENST00000546378 POM121L2Q96KW2 1035 aa12.23□□□□□ -0.45
HOXC11-202ENST00000546378 C17orf112F2Z3M2 114 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 RND2P52198 227 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 TRAT1Q6PIZ9 186 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 LYG1Q8N1E2 194 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 GBGT1Q8N5D6 347 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 ENY2Q9NPA8 101 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 RNF114Q9Y508 228 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 DIRC3C9JPN6 131 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 NEURL1O76050 574 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 ZNF137PP52743 207 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 FOXA3P55318 350 aaPredicted RBP12.22□□□□□ -0.45
HOXC11-202ENST00000546378 ZCCHC24Q8N2G6 241 aaKnown RBP12.22□□□□□ -0.45
HOXC11-202ENST00000546378 BLNKQ8WV28 456 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 KCNE4Q8WWG9 221 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 C5orf30Q96GV9 206 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 ABI3Q9P2A4 366 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 RPLP1P05386 114 aaKnown RBP12.22□□□□□ -0.45
HOXC11-202ENST00000546378 CSN3P07498 182 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 SRIP30626 198 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 TBC1D28Q2M2D7 210 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 MBD3L1Q8WWY6 194 aa12.22□□□□□ -0.45
HOXC11-202ENST00000546378 YTHDF2Q9Y5A9 579 aaKnown RBP12.22□□□□□ -0.45
HOXC11-202ENST00000546378 ERVK-16P61578 105 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 PSG7Q13046 419 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 ADAMTS20P59510 1910 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 NCOR2Q9Y618 2525 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 AKAP13Q12802 2813 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 J3QT63 122 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 SPINT2O43291 252 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 MEOX1P50221 254 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 RNASEKQ6P5S7 137 aaKnown RBP12.21□□□□□ -0.45
HOXC11-202ENST00000546378 KDF1Q8NAX2 398 aaPredicted RBP12.21□□□□□ -0.45
HOXC11-202ENST00000546378 STARD4Q96DR4 205 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 NOL4LQ96MY1 436 aaPredicted RBP12.21□□□□□ -0.45
HOXC11-202ENST00000546378 PRDM14Q9GZV8 571 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 HIPK2Q9H2X6 1198 aa12.21□□□□□ -0.45
HOXC11-202ENST00000546378 TLN1Q9Y490 2541 aaKnown RBP12.21□□□□□ -0.46
HOXC11-202ENST00000546378 GCGP01275 180 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 IGFBP2P18065 325 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 FKBP2P26885 142 aaKnown RBP12.21□□□□□ -0.46
HOXC11-202ENST00000546378 TPPP2P59282 170 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 MIR17HGQ75NE6 70 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 ZGRF1Q86YA3 2104 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 OR5R1Q8NH85 324 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 LRRC29Q8WV35 223 aa12.21□□□□□ -0.46
HOXC11-202ENST00000546378 TBL2Q9Y4P3 447 aaKnown RBP12.21□□□□□ -0.46
HOXC11-202ENST00000546378 A0A1B0GW64 132 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 AHRRA9YTQ3 701 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 C21orf140B9A014 251 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 DKK1O94907 266 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 OR10J1P30954 320 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 SNRNP40Q96DI7 357 aaKnown RBP12.2□□□□□ -0.46
HOXC11-202ENST00000546378 RCHY1Q96PM5 261 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 SPRY4Q9C004 299 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 TMEM30CPA0ZSE6 113 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 SH2D7A6NKC9 451 aaPredicted RBP12.2□□□□□ -0.46
HOXC11-202ENST00000546378 ETV2O00321 342 aaPredicted RBP12.2□□□□□ -0.46
HOXC11-202ENST00000546378 RELBQ01201 579 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 DEFB109BQ30KR1 87 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 SPATA45Q537H7 98 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 DUX4L9Q6RFH8 374 aaPredicted RBP12.2□□□□□ -0.46
HOXC11-202ENST00000546378 UNQ5815/PRO19632Q6UWF5 114 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 ASCL4Q6XD76 172 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 ASCL5Q7RTU5 278 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 ZCCHC14Q8WYQ9 949 aaKnown RBP12.2□□□□□ -0.46
HOXC11-202ENST00000546378 C2orf88Q9BSF0 95 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 DNAJC4Q9NNZ3 241 aa12.2□□□□□ -0.46
HOXC11-202ENST00000546378 TRAV5A0A0B4J249 113 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 A0A1W2PN81 502 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 REG1AP05451 166 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 TDGF1P3P51864 188 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 ACTL10Q5JWF8 245 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 PIP4P1Q86T03 277 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 ANKRD11Q6UB99 2663 aaPredicted RBP12.19□□□□□ -0.46
HOXC11-202ENST00000546378 CHD8Q9HCK8 2581 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 DLX1P56177 255 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 FER1L6-AS2Q96M78 137 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 P2RX4Q99571 388 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 IL36GQ9NZH8 169 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 MMD2Q8IY49 270 aa12.19□□□□□ -0.46
HOXC11-202ENST00000546378 OPN3Q9H1Y3 402 aaPredicted RBP12.19□□□□□ -0.46
HOXC11-202ENST00000546378 CBY3A6NI87 242 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 GNG4P50150 75 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 HNRNPA3P51991 378 aaKnown RBP12.18□□□□□ -0.46
HOXC11-202ENST00000546378 PTTG1IPP53801 180 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 PSMG3Q9BT73 122 aaPredicted RBP12.18□□□□□ -0.46
HOXC11-202ENST00000546378 RNF212BA8MTL3 300 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 A8MXE2 369 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 OR5G3P0C626 314 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 ZNF83P51522 516 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 LGALS4P56470 323 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 Q6P435 159 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 RIMS4Q9H426 269 aaPredicted RBP12.18□□□□□ -0.46
HOXC11-202ENST00000546378 TMEM106BQ9NUM4 274 aa12.18□□□□□ -0.46
HOXC11-202ENST00000546378 POLDIP2Q9Y2S7 368 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms