RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 Q6ZT83 130 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 BAGE3Q86Y29 109 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 BAGE2Q86Y30 109 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 MMD2Q8IY49 270 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 C1orf174Q8IYL3 243 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 GCNT2Q8N0V5 402 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 TMEM105Q8N8V8 129 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 PPP1R35Q8TAP8 253 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 S1PR3Q99500 378 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 CDX2Q99626 313 aaPredicted RBP7.23□□□□□ -1.25
TDP1-204ENST00000545686 FOXJ2Q9P0K8 574 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 GNG12Q9UBI6 72 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 FOXA2Q9Y261 457 aaPredicted RBP7.23□□□□□ -1.25
TDP1-204ENST00000545686 V9GYV3 84 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 SNURFLB1AK76 121 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 ZNF25P17030 456 aaPredicted RBP7.23□□□□□ -1.25
TDP1-204ENST00000545686 NPY1RP25929 384 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 G0S2P27469 103 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 THBS3P49746 956 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 PRR20EP86478 221 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 PRR20CP86479 221 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 PRR20DP86480 221 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 PRR20BP86481 221 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 PRR20AP86496 221 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 HLA-DRB5Q30154 266 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 ARSJQ5FYB0 599 aaPredicted RBP7.23□□□□□ -1.25
TDP1-204ENST00000545686 TMEM164Q5U3C3 297 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 CD177Q8N6Q3 437 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 TPRX1Q8N7U7 411 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.23□□□□□ -1.25
TDP1-204ENST00000545686 SLC24A4Q8NFF2 622 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 RFESDQ8TAC1 157 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 DDB2Q92466 427 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 FER1L6-AS2Q96M78 137 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 SAMD10Q9BYL1 202 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 DEFB127Q9H1M4 99 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 IFI27L2Q9H2X8 130 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 RAB9BQ9NP90 201 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 ZNF586Q9NXT0 402 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 FRYLO94915 3013 aa7.23□□□□□ -1.25
TDP1-204ENST00000545686 AHCTF1Q8WYP5 2266 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SLC17A3O00476 420 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 MGST3O14880 152 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 LAMTOR5O43504 91 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 LYZL6O75951 148 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 LINC00614P0C842 121 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 HNF1AP20823 631 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 HOXC12P31275 282 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 PRDX2P32119 198 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 BRS3P32247 399 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 COMPP49747 757 aaPredicted RBP7.22□□□□□ -1.25
TDP1-204ENST00000545686 GNG4P50150 75 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 RAB7AP51149 207 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 CASP6P55212 293 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 CX3CL1P78423 397 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 RTL8BQ17RB0 113 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 KRTCAP3Q53RY4 240 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 ABHD12Q8N2K0 398 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SSMEM1Q8WWF3 244 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 NEUROG1Q92886 237 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 RNF2Q99496 336 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 LRFN3Q9BTN0 628 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 NCOR1P1Q9H4R4 102 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SEPSECSQ9HD40 501 aaKnown RBP7.22□□□□□ -1.25
TDP1-204ENST00000545686 OSTCQ9NRP0 149 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 TMEM14BQ9NUH8 114 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 CLCF1Q9UBD9 225 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SLC45A2Q9UMX9 530 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 HEATR1Q9H583 2144 aaKnown RBP7.22□□□□□ -1.25
TDP1-204ENST00000545686 CDKN1AP38936 164 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 IER3P46695 156 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 LOXL3P58215 753 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 GUSBP1Q15486 140 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 MBNL2Q5VZF2 373 aaKnown RBP7.22□□□□□ -1.25
TDP1-204ENST00000545686 LRP11Q86VZ4 500 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SIGLECL1Q8N7X8 197 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 LRRC29Q8WV35 223 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SLC35E1Q96K37 410 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 TMEM208Q9BTX3 173 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 ENY2Q9NPA8 101 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 IL19Q9UHD0 177 aa7.22□□□□□ -1.25
TDP1-204ENST00000545686 SRRM5B3KS81 715 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 REG1AP05451 166 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 GPX1P07203 203 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 OR5G3P0C626 314 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 IRF2P14316 349 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 ATP5IP56385 69 aaPredicted RBP7.21□□□□□ -1.25
TDP1-204ENST00000545686 HSPE1P61604 102 aaKnown RBP7.21□□□□□ -1.25
TDP1-204ENST00000545686 EDDM3AQ14507 147 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 POU2AF1Q16633 256 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 CENPWQ5EE01 88 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 SPATA31B1PQ5VZV4 182 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 FAM214BQ7L5A3 538 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 PNKDQ8N490 385 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 TMEM178AQ8NBL3 297 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 VN1R17PQ8TDU5 208 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 KCNS1Q96KK3 526 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 DCTN5Q9BTE1 182 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 C19orf24Q9BVV8 132 aa7.21□□□□□ -1.25
TDP1-204ENST00000545686 GOLT1BQ9Y3E0 138 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms