RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 FANCD2OSQ96PS1 177 aa8.77□□□□□ -1.01
YBX3-216ENST00000544622 RBM38Q9H0Z9 239 aaKnown RBP8.77□□□□□ -1.01
YBX3-216ENST00000544622 AKIP1Q9NQ31 210 aa8.77□□□□□ -1.01
YBX3-216ENST00000544622 TMEM140Q9NV12 185 aa8.77□□□□□ -1.01
YBX3-216ENST00000544622 COA4Q9NYJ1 87 aa8.77□□□□□ -1.01
YBX3-216ENST00000544622 ZMAT5Q9UDW3 170 aaKnown RBP8.77□□□□□ -1.01
YBX3-216ENST00000544622 DMRT1Q9Y5R6 373 aa8.77□□□□□ -1.01
YBX3-216ENST00000544622 C13orf42A0A1B0GVH6 325 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 FAM223BA6NKX1 122 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 MARCH11A6NNE9 402 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 M0QYG6 137 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 PRH1P02810 166 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 AREGP15514 252 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 OR2B8PP59922 312 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 MRPS10P82664 201 aaKnown RBP8.76□□□□□ -1.01
YBX3-216ENST00000544622 DGCR2P98153 550 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 DEFA5Q01523 94 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 ZNF429Q86V71 674 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 SLC25A42Q86VD7 318 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 FAM223AQ8IWN6 122 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 SLC38A6Q8IZM9 456 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 NECAP1Q8NC96 275 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 MRGPRFQ96AM1 343 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 RABL2AQ9UBK7 228 aaPredicted RBP8.76□□□□□ -1.01
YBX3-216ENST00000544622 PEF1Q9UBV8 284 aaKnown RBP8.76□□□□□ -1.01
YBX3-216ENST00000544622 RABL2BQ9UNT1 228 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 ZNF257Q9Y2Q1 563 aa8.76□□□□□ -1.01
YBX3-216ENST00000544622 MPPED1O15442 326 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 IGKV1-39P01597 117 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 TRBV12-3P01733 135 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 IGKV1D-39P04432 117 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 ZP3P21754 424 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 PSMB6P28072 239 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 LPAR6P43657 344 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 TAS2R19P59542 299 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 RND3P61587 244 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 RHOGP84095 191 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 PHLDA2Q53GA4 152 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 RNASE12Q5GAN4 147 aaKnown RBP8.75□□□□□ -1.01
YBX3-216ENST00000544622 RNASE10Q5GAN6 216 aaKnown RBP8.75□□□□□ -1.01
YBX3-216ENST00000544622 IL34Q6ZMJ4 242 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 TBC1D26Q86UD7 250 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 TERB2Q8NHR7 220 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 SMIM4Q8WVI0 70 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 ZNF486Q96H40 463 aaPredicted RBP8.75□□□□□ -1.01
YBX3-216ENST00000544622 DIRAS2Q96HU8 199 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 FYTTD1Q96QD9 318 aaKnown RBP8.75□□□□□ -1.01
YBX3-216ENST00000544622 SRSF8Q9BRL6 282 aaKnown RBP8.75□□□□□ -1.01
YBX3-216ENST00000544622 HRASLSQ9HDD0 168 aa8.75□□□□□ -1.01
YBX3-216ENST00000544622 LSM4Q9Y4Z0 139 aaKnown RBP8.75□□□□□ -1.01
YBX3-216ENST00000544622 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.74□□□□□ -1.01
YBX3-216ENST00000544622 IGLC7A0M8Q6 106 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 GSTZ1O43708 216 aaPredicted RBP8.74□□□□□ -1.01
YBX3-216ENST00000544622 KRASP01116 189 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 IFNA6P05013 189 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 TNFSF8P32971 234 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 C15orf32Q32M92 178 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 STEAP1BQ6NZ63 245 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 C19orf35Q6ZS72 473 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 DMBX1Q8NFW5 382 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 SEC22AQ96IW7 307 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 NDUFA4L2Q9NRX3 87 aa8.74□□□□□ -1.01
YBX3-216ENST00000544622 IGLV11-55A0A075B6I3 123 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 TEX50A0A1B0GTY4 177 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 ANKRD34BA5PLL1 514 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 DBX1A6NMT0 343 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 ZNF701M0R085 212 aaPredicted RBP8.73□□□□□ -1.01
YBX3-216ENST00000544622 BMPR1BO00238 502 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 OR2J3O76001 311 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 G6PCP35575 357 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 ECI1P42126 302 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 ATP5G2Q06055 141 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 WT1-ASQ06250 92 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 QTRT1Q9BXR0 403 aaKnown RBP8.73□□□□□ -1.01
YBX3-216ENST00000544622 COMMD5Q9GZQ3 224 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 C6orf62Q9GZU0 229 aaPredicted RBP8.73□□□□□ -1.01
YBX3-216ENST00000544622 TMEM14BQ9NUH8 114 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 SIGLEC8Q9NYZ4 499 aa8.73□□□□□ -1.01
YBX3-216ENST00000544622 HUWE1Q7Z6Z7 4374 aaKnown RBP8.73□□□□□ -1.01
YBX3-216ENST00000544622 ANKRD20A5PA0PJZ0 165 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 SAP30O75446 220 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 NDUFB8O95169 186 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 RAB3DO95716 219 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 IGLV1-51P01701 117 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 RPA2P15927 270 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 PI3P19957 117 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 S100GP29377 79 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 PIGPP57054 158 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 IL18Q14116 193 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 MEF2DQ14814 521 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 THOC7Q6I9Y2 204 aaKnown RBP8.72□□□□□ -1.01
YBX3-216ENST00000544622 HSD17B13Q7Z5P4 300 aaPredicted RBP8.72□□□□□ -1.01
YBX3-216ENST00000544622 OR10W1Q8NGF6 305 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 OR9G4Q8NGQ1 327 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 MCFD2Q8NI22 146 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 CCDC140Q96MF4 163 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 FBXL7Q9UJT9 491 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 ZNF256Q9Y2P7 627 aaPredicted RBP8.72□□□□□ -1.01
YBX3-216ENST00000544622 NSG2Q9Y328 171 aa8.72□□□□□ -1.01
YBX3-216ENST00000544622 DPPA5A6NC42 116 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms