RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 OR2V2Q96R30 315 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 MEGF9Q9H1U4 602 aa12.05□□□□□ -0.48
LIMS1-215ENST00000544547 ABCA4P78363 2273 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 M0QZ24 198 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 CA2P00918 260 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 AMY1AP04745 511 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 AMMECR1LQ6DCA0 310 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 A6NDN8 102 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 EFNA2O43921 213 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 SMPD2O60906 423 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 OR2H2O95918 312 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 HAND1O96004 215 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 MAS1LP35410 378 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 NMUP48645 174 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 SF3B5Q9BWJ5 86 aaKnown RBP12.04□□□□□ -0.48
LIMS1-215ENST00000544547 IGHV5-10-1A0A0J9YXX1 117 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 TMEM210A6NLX4 147 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 ISLRO14498 428 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 CCL1P22362 96 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 GCHFRP30047 84 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 Q6ZRM9 215 aa12.04□□□□□ -0.48
LIMS1-215ENST00000544547 CA1P00915 261 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-215ENST00000544547 OPRK1P41145 380 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 GTF3C1Q12789 2109 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 SPSB4Q96A44 273 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 SMIM12Q96EX1 92 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 KCNS1Q96KK3 526 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 NAA38Q9BRA0 125 aaKnown RBP12.03□□□□□ -0.48
LIMS1-215ENST00000544547 J3QT63 122 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 ZNF324O75467 553 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-215ENST00000544547 C1orf174Q8IYL3 243 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 TIMM9Q9Y5J7 89 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 CLPSP04118 112 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 COX7A1P24310 79 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 FLYWCH2Q96CP2 140 aaKnown RBP12.03□□□□□ -0.48
LIMS1-215ENST00000544547 SSBP4Q9BWG4 385 aaPredicted RBP12.03□□□□□ -0.48
LIMS1-215ENST00000544547 TMEM140Q9NV12 185 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 PPIAL4DF5H284 164 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 HBZP02008 142 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 RBP4P02753 201 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 Q6ZWC4 215 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 TMEM70Q9BUB7 260 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 ELOVL5Q9NYP7 299 aa12.03□□□□□ -0.48
LIMS1-215ENST00000544547 YTHDF2Q9Y5A9 579 aaKnown RBP12.03□□□□□ -0.48
LIMS1-215ENST00000544547 LOC389332A0A1B0GUA5 103 aa12.02□□□□□ -0.48
LIMS1-215ENST00000544547 hADV38S2A0JD32 116 aa12.02□□□□□ -0.48
LIMS1-215ENST00000544547 FAM90A26D6RGX4 464 aa12.02□□□□□ -0.48
LIMS1-215ENST00000544547 IGFBP7Q16270 282 aa12.02□□□□□ -0.48
LIMS1-215ENST00000544547 TXNDC17Q9BRA2 123 aa12.02□□□□□ -0.48
LIMS1-215ENST00000544547 WDR54Q9H977 334 aa12.02□□□□□ -0.48
LIMS1-215ENST00000544547 P01737 135 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 FAM87AP0C7U9 286 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 LIFP15018 202 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 STPG4Q8N801 248 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 ZNF430Q9H8G1 570 aaPredicted RBP12.02□□□□□ -0.49
LIMS1-215ENST00000544547 ONECUT1Q9UBC0 465 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 ZNF726P1Q15940 193 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 OR1L4Q8NGR5 311 aa12.02□□□□□ -0.49
LIMS1-215ENST00000544547 MKI67P46013 3256 aaKnown RBP12.02□□□□□ -0.49
LIMS1-215ENST00000544547 C3orf79P0CE67 100 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 COL8A1P27658 744 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 ZNF826PQ6ZT77 177 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 FNDC4Q9H6D8 234 aaPredicted RBP12.01□□□□□ -0.49
LIMS1-215ENST00000544547 CLEC5AQ9NY25 188 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 BDP1A6H8Y1 2624 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 A0A0C4DFX4 3053 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 PKDREJQ9NTG1 2253 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 hCG_38984A0A1B0GV85 526 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 C17orf98A8MV24 154 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 LINC00869P0C866 280 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 PSG1P11464 419 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 S100A4P26447 101 aaKnown RBP12.01□□□□□ -0.49
LIMS1-215ENST00000544547 KRTCAP3Q53RY4 240 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 SIGLEC12Q96PQ1 595 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 C20orf144Q9BQM9 153 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 SPAARA0A1B0GVQ0 90 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 RAMP3O60896 148 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 KCNMB1Q16558 191 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 MPV17L2Q567V2 206 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 CRIM1Q9NZV1 1036 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.01□□□□□ -0.49
LIMS1-215ENST00000544547 A0A1W2PR77 199 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 OOEPA6NGQ2 149 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 HIST1H1EP10412 219 aaKnown RBP12.01□□□□□ -0.49
LIMS1-215ENST00000544547 TIMP3P35625 211 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 TM4SF20Q53R12 229 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 TPTE2P1Q5T6R2 138 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 SRXN1Q9BYN0 137 aa12.01□□□□□ -0.49
LIMS1-215ENST00000544547 F11RQ9Y624 299 aaKnown RBP12.01□□□□□ -0.49
LIMS1-215ENST00000544547 A0A1W2PRD5 423 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 A0A1W2PRF3 423 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 A0A1W2PRM7 423 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 M0R296 226 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 IGHV3-48P01763 117 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 PEF1Q9UBV8 284 aaKnown RBP12□□□□□ -0.49
LIMS1-215ENST00000544547 COL4A3Q01955 1670 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 ZNF785A8K8V0 405 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 GNG7O60262 68 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 NUPR1O60356 82 aa12□□□□□ -0.49
LIMS1-215ENST00000544547 RNASE8Q8TDE3 154 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms