RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	IGLV1-44	P01699	117 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	RBPJ	Q06330	500 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	AES	Q08117	197 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	FAM27E3	Q08E93	113 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	IL22RA2	Q969J5	263 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	VAMP8	Q9BV40	100 aa		12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	HEATR1	Q9H583	2144 aa	Known RBP	12.48	□□□□□ -0.41
CHFR-223	ENST00000544268	TRBV6-6	A0A0A6YYG2	114 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	IGHV1-18	A0A0C4DH31	117 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	GOSR1	O95249	250 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	RPL15	P61313	204 aa	Known RBP	12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	PAFAH1B2	P68402	229 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	LY6D	Q14210	128 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	ATP6V1F	Q16864	119 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	CST9LP1	Q5W188	147 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	KCNIP4	Q6PIL6	250 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	LRP11	Q86VZ4	500 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	DRAM1	Q8N682	238 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	OR52L2P	Q8NGH6	319 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	KLF14	Q8TD94	323 aa	Predicted RBP	12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	PAM16	Q9Y3D7	125 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	RPL30	P62888	115 aa	Known RBP	12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	TIMM23B	Q5SRD1	257 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	BTF3L4	Q96K17	158 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	RNF2	Q99496	336 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	DCTN5	Q9BTE1	182 aa		12.47	□□□□□ -0.41
CHFR-223	ENST00000544268	IGHV3-43	A0A0B4J1X8	118 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	LRP5L	A4QPB2	252 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	ZNF737	O75373	536 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	IGHV3-43D	P0DP04	118 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	FABP6	P51161	128 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	SPINK9	Q5DT21	86 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	TRAPPC1	Q9Y5R8	145 aa		12.46	□□□□□ -0.41
CHFR-223	ENST00000544268	DEFB108A	A8MXU0	73 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	C22orf46	C9J442	243 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	TMEM250	H0YL14	139 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	NDUFB8	O95169	186 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	ZNF83	P51522	516 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	MEF2B	Q02080	365 aa	Predicted RBP	12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	C22orf34	Q6ZV56	151 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268		Q6ZWC4	215 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	LINC00596	Q86U02	117 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	C11orf53	Q8IXP5	236 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	RFESD	Q8TAC1	157 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	CMTM2	Q8TAZ6	248 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	SCGB1C1	Q8TD33	95 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	CIB3	Q96Q77	187 aa	Predicted RBP	12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	PSMG3	Q9BT73	122 aa	Predicted RBP	12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	PXMP4	Q9Y6I8	212 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	COL6A6	A6NMZ7	2263 aa		12.46	□□□□□ -0.42
CHFR-223	ENST00000544268	IGHV2OR16-5	A0A0B4J2B6	119 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	HAND1	O96004	215 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	GCH1	P30793	250 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	TPPP2	P59282	170 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	ZNF816	Q0VGE8	651 aa	Predicted RBP	12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	TMEM41B	Q5BJD5	291 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	SPANXN5	Q5MJ07	72 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	LYG1	Q8N1E2	194 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	RPUSD4	Q96CM3	377 aa	Known RBP	12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	MANBAL	Q9NQG1	85 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	ACACB	O00763	2458 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	TRGV8	A0A0C4DH27	118 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	C12orf77	C9JDV5	145 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	IGHV3-13	P01766	116 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	IGHV3-7	P01780	117 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	SSTR5	P35346	364 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	G6PC	P35575	357 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	LTC4S	Q16873	150 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	PRSS57	Q6UWY2	283 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268	FAM169B	Q8N8A8	192 aa		12.45	□□□□□ -0.42
CHFR-223	ENST00000544268		A0A1B0GUS0	222 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	DUXB	A0A1W2PPF3	345 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	HMGB3	O15347	200 aa	Known RBP	12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	SYNGR2	O43760	224 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	KRAS	P01116	189 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	CD33	P20138	364 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	IL3RA	P26951	378 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	MDH2	P40926	338 aa	Known RBP	12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	BRWD1-AS2	P59051	145 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	SERF2	P84101	59 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	UBE2V1	Q13404	147 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	OR1L6	Q8NGR2	347 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	FAM216A	Q8WUB2	273 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	ALKBH7	Q9BT30	221 aa	Predicted RBP	12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	OR2D2	Q9H210	308 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	PSENEN	Q9NZ42	101 aa		12.44	□□□□□ -0.42
CHFR-223	ENST00000544268	NBEAP1	P0C6P0	100 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	DEFA4	P12838	97 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	ZNF146	Q15072	292 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	MMD	Q15546	238 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	TMEM108	Q6UXF1	575 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	FGFRL1	Q8N441	504 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	COQ2	Q96H96	371 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	VKORC1	Q9BQB6	163 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	VPS25	Q9BRG1	176 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	PARL	Q9H300	379 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	MBNL3	Q9NUK0	354 aa	Known RBP	12.43	□□□□□ -0.42
CHFR-223	ENST00000544268		M0R1B8	84 aa		12.43	□□□□□ -0.42
CHFR-223	ENST00000544268	SH2D1B	O14796	132 aa		12.43	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms